PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa003707
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family ARF
Protein Properties Length: 1046aa    MW: 118237 Da    PI: 6.7726
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58696905PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-27540PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.61.2e-23126227199
                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                f+k+lt sd++++g +++p++ ae++      +++++  ++l+ +d++ +sW++++iyr++++r++lt+GW+ Fv++++L +gD v+F   ++++ +l++
  Lsa003707 126 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfSMQPPA-QELVARDLHDQSWTFRHIYRGQPKRHLLTTGWSVFVSSKRLSAGDAVLFI--RDEKSQLLL 222
                99*****************************9445444.38************************************************..456777899 PP

                EEE-S CS
         B3  95 kvfrk 99 
                +++r+
  Lsa003707 223 GIRRA 227
                99997 PP
2Auxin_resp116.81.8e-38252334183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+++  F++++nPras++eFv++++k++ka++++vs+GmRf+m+fete+s  rr++Gtv+g+sdld++rW+nS+Wr+L+
   Lsa003707 252 AAHAATNNRLFTIFFNPRASPAEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTVTGISDLDSTRWKNSQWRNLQ 334
                 79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.79E-45116255IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-42118241IPR015300DNA-binding pseudobarrel domain
CDDcd100174.27E-21125226No hitNo description
PROSITE profilePS5086312.774126228IPR003340B3 DNA binding domain
PfamPF023621.0E-21126227IPR003340B3 DNA binding domain
SMARTSM010199.0E-24126228IPR003340B3 DNA binding domain
PfamPF065071.6E-33252334IPR010525Auxin response factor
PfamPF023096.4E-109161006IPR033389AUX/IAA domain
PROSITE profilePS5174526.8669191012IPR000270PB1 domain
SuperFamilySSF542771.47E-8932998No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1046 aa     Download sequence    Send to blast
MKAPSNGYQP SSGEGARKLM NSELWHACAG PLVSLPPIGS LVVYFPQGHS EQVAASMKKD  60
TENIPSYPNL PSKLICMLHN VALHADAETD EVYAQMTLQP VNKYDQEALL MSEMGLKQNK  120
QPAEFFCKTL TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQELVARD LHDQSWTFRH  180
IYRGQPKRHL LTTGWSVFVS SKRLSAGDAV LFIRDEKSQL LLGIRRANRQ QPALSSSVIS  240
SDSMHIGILA AAAHAATNNR LFTIFFNPRA SPAEFVIPLA KYNKAMYTQV SLGMRFRMMF  300
ETEESGVRRY MGTVTGISDL DSTRWKNSQW RNLQVGWDES TAGERPSRVS VWEIEPVVTP  360
FYICPPPFFR QKFARQSGMP EDESDVENAY KRGMPWLDDF GMKEASSSIF PGLSLVQWMS  420
MQQNHGISSM QPGVFPPNAL NSNEDPSKLL SFQSPNLIVP SSQMNKQNQS QTNQPHQPSL  480
QWTQQQQQHL QHMLQQQQQP QQMQQQHMLN LQQQNSMYSQ LQQQQQQQHQ QQQQQQQQQQ  540
QQQQQQQQHQ QQQQKQLQLQ PPPSSVSQES QFQHQQTQLQ QAPFHMLQHS MSPRQPVQHA  600
PPQQSHSEQQ LLQKVQQQQQ QQQHQQQQQQ QQQMQYLLSS VTRTEPQTHF PIQQQPKQQS  660
LPQQQLSGNS FSTSTLLQSP SFPVNQLQSQ SQSQPRQLMP IRVHSGITDG DTPSCSTSPS  720
TNNCQLTPPS SFLNKNQLTP STFVNDSMVV AHHLQNQNKC NIRVKEELQL PDVKLPEPPK  780
YKEQMEPSTS VTSYCLDTGG LQNNFSIPNF CVDGDIIQPQ NRSNSNLMGN IDSLPPDALL  840
SRGFDSQNLL SSLCGGPRDI ETELSSADIN PQSFGMQDMS FKPGCSNDVS TRLQKNDVAV  900
NDSGVLGNGL WGNQTQRVRT YTKVQKRGSV GRTIDVTRYK GYEELRHDLA RMFGIEGQLE  960
DTQRTDWKLV YVDHENDILL VGDDPWEEFV SCVQSIKILS YSEVQQMSLD GDLGNMPVPN  1020
QASSGTDSGN PWKGQYEDNS AASFNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1691535545388Auxin response factor 5
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023732183.10.0auxin response factor 19-like isoform X1
TrEMBLA0A2J6KJ670.0A0A2J6KJ67_LACSA; Auxin response factor
STRINGXP_010106948.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19