PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa003310
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bZIP
Protein Properties Length: 193aa    MW: 22512.1 Da    PI: 9.2839
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-43985PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_127.56.9e-0981135559
                CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                ++ rr+++NRe+ArrsR RK++ +e+L++ v   ++ N++  ++l   + +++  
  Lsa003310  81 RKRRRMISNRESARRSRMRKQKHLENLRNQVNRHKTVNREIMNRLRFVSHHAQVI 135
                5789*****************************9999987777776666665555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.7E-1177141IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.9179142IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.09E-1081131No hitNo description
Gene3DG3DSA:1.20.5.1703.8E-881153No hitNo description
CDDcd147022.12E-1682131No hitNo description
PROSITE patternPS0003608499IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 193 aa     Download sequence    Send to blast
MLSSVFPTDG DHIPSDDFLG TGFTPWDTDT HESPFLYPPQ EPVFSFSGSD DSTPKTNSSN  60
SGSDEGDVDR NPIEVTLIDE RKRRRMISNR ESARRSRMRK QKHLENLRNQ VNRHKTVNRE  120
IMNRLRFVSH HAQVIRQENE RLRSESVMLR QKLWDMRQVL LVRQLQNQLL SSAWPCNNNV  180
TTINEQNPQS LIT
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18084RKRRR
280101RKRRRMISNRESARRSRMRKQK
393100RRSRMRKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023751863.11e-141basic leucine zipper 4-like
TrEMBLA0A2J6M4R81e-139A0A2J6M4R8_LACSA; Uncharacterized protein
STRINGevm.model.supercontig_129.747e-58(Carica papaya)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37730.11e-25basic leucine-zipper 7