PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa002621
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GATA
Protein Properties Length: 271aa    MW: 30169.9 Da    PI: 7.4063
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58678686PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.24.6e-18193227135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  Lsa002621 193 CQHCLAEKTPQWRAGPMGPKTLCNACGVRYKSGRL 227
                *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.648187223IPR000679Zinc finger, GATA-type
SMARTSM004015.1E-17187237IPR000679Zinc finger, GATA-type
SuperFamilySSF577168.08E-15189250No hitNo description
Gene3DG3DSA:3.30.50.103.1E-14190225IPR013088Zinc finger, NHR/GATA-type
CDDcd002026.15E-13192243No hitNo description
PfamPF003201.1E-15193227IPR000679Zinc finger, GATA-type
PROSITE patternPS003440193218IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MALDPTSCLM IDDDILNFSL DGEDEDLDDK HNTTKPPSSS MDFSKTNSQE PDDCCGSFPE  60
FAEEELEWLS NKDAFPALET CFDIITNPNP NPIVMVVDHL SPVSVLENSA SSSHSNTNSN  120
SNSTITNCCG SLHVPISYPV KKRSKRRRKR RKGFPELPSE QCWWWNQENM KKQDLLPPPP  180
QPPTAATGIG RRCQHCLAEK TPQWRAGPMG PKTLCNACGV RYKSGRLVPE YRPASSPTFS  240
SVKHSNSHRK IMEMRKHSND GGKKGFGYGV G
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141149KRSKRRRKR
2145151RRRKRRK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023732227.10.0GATA transcription factor 1-like
TrEMBLA0A2J6KJ540.0A0A2J6KJ54_LACSA; Uncharacterized protein
STRINGXP_009758423.17e-75(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.13e-45GATA transcription factor 1