PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Lsa002231 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | ERF | ||||||||||||
Protein Properties | Length: 221aa MW: 24644.5 Da PI: 6.6411 | ||||||||||||
Description | ERF family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.3 | 5.3e-20 | 19 | 68 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrd ++ ++r++lg+f++ae+Aa+a++aa+++l+g Lsa002231 19 RYRGVRKKP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAARNLRG 68 59****888.**********883....5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 4.0E-36 | 19 | 82 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.84E-18 | 19 | 76 | No hit | No description |
SuperFamily | SSF54171 | 7.85E-22 | 19 | 77 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-31 | 19 | 77 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.42 | 19 | 76 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.2E-13 | 19 | 68 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-10 | 20 | 31 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.4E-10 | 42 | 58 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MAEAALFGTD GSGSKPDIRY RGVRKKPWGR FAAEIRDPWK KTRVWLGTFD SAEDAARAYD 60 AAARNLRGPK AKTNFPLTTS PYYHQQIPND HHPFLDHHSM LYQHPNHHSD YPIVVTQRPT 120 CSSLSSTLES FSGPRPPVKS DFVLPRRHHP RSPPVFPDDC HSDCDSSSSV VVDGIGEGCD 180 AGEIACSSFT KPFLSIDLNM PPPFDDFELA EDDLHCTALR L |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-22 | 20 | 77 | 6 | 64 | ATERF1 |
3gcc_A | 8e-22 | 20 | 77 | 6 | 64 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional repressor. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways and could also regulate other AtERFs. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11487705, ECO:0000269|PubMed:9756931}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), ethylene and Alternaria brassicicola (locally and systemically). Moderate induction by wounding or drought stress does not require EIN2, whereas induction by NaCl does. Transcripts accumulate slightly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by ethylene, exogenous abscisic acid (ABA), cold and heat stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:12805630}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023745762.1 | 1e-164 | ethylene-responsive transcription factor 3-like | ||||
Swissprot | O80339 | 8e-48 | ERF82_ARATH; Ethylene-responsive transcription factor 3 | ||||
TrEMBL | A0A2J6JPN4 | 1e-163 | A0A2J6JPN4_LACSA; Uncharacterized protein | ||||
STRING | PGSC0003DMT400037359 | 8e-69 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20310.1 | 3e-34 | ethylene response factor 7 |
Publications ? help Back to Top | |||
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