PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Lsa002170 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | GRAS | ||||||||||||
Protein Properties | Length: 557aa MW: 63210.9 Da PI: 5.8105 | ||||||||||||
Description | GRAS family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 299.9 | 6.5e-92 | 195 | 545 | 3 | 352 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102 ++Lle+A+av++++ ++ q+l++ l+el+sp+gd ++l yf++AL +r+++s++ y+ l++ +++ ++ +++ + f+evsP+ +f+h+++N aI Lsa002170 195 DVLLEAARAVADKNSTRLQQLMWMLNELSSPYGDVDEKLSCYFLQALYSRMTDSGELNYRNLSSISEKVSTFESTRELVLKFQEVSPWTTFGHVACNGAI 294 68***************************************************9999999998887775554444444445******************* PP GRAS 103 leavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg....skeeleetgerLakfAeelgvpfefnvlvak.rledleleeLrvk 197 lea++ge+++Hi+D + ++++QWp+Ll+a+a+R++++p+lR+T+v s++s ++ ++e+g+r++kfA+ +gvpf+fnv+++ +l+dl++++L+++ Lsa002170 295 LEALDGETKLHIVDVSNTYCTQWPTLLEAIATRADEAPHLRLTTVISSRSAgsdgIERIMREIGSRMEKFARLMGVPFKFNVIHHIgDLSDLNFSQLAIQ 394 *******************************************99998877788888999**********************95555************* PP GRAS 198 pgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdsleaklpreseerikvErellgre 293 ++Eala+nl l ++ +++rd ++++++s++Pk++++ve+ead++ + +Fl++f e+l+++ + f++l++++p++s er ++Ere gr+ Lsa002170 395 SDEALAINLNGTLRSVS------NHRRDYLISMFRSMNPKIMTIVEEEADLEVGidgfEFLRGFQECLKWFRVYFEALNESFPQTSTERLMLERE-AGRA 487 ***********999997......66799********************9986555666*************************************.**** PP GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve 352 ++++vac+ a+++er+et+++W++rl++ GF+ v++se+ +++++llr++k +g+++ Lsa002170 488 VMDLVACSPANSVERRETANRWSSRLRANGFGGVSYSEEGCDDVRALLRRYK-EGWSMA 545 ***************************************************9.776665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 47.839 | 167 | 548 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.3E-89 | 195 | 545 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 557 aa Download sequence Send to blast |
XINIKHPLLE FNLNTYDTTY KNTHYLTLYD KTSFILTGYY MDTMSTLRHQ QLLSDYQQQH 60 HHHHHRQSFN STVSSSSPRS STDHQTTTGA GHYYQPQEEC FPSTFFMEED DLSSSSSLQQ 120 HYYSSNQLQP HFHHQFSATP TPTSTTSTTT TPPPPPKTHG FSSNSDHTNF NYSSSQDHIA 180 MEFSNSFSAN GWASDVLLEA ARAVADKNST RLQQLMWMLN ELSSPYGDVD EKLSCYFLQA 240 LYSRMTDSGE LNYRNLSSIS EKVSTFESTR ELVLKFQEVS PWTTFGHVAC NGAILEALDG 300 ETKLHIVDVS NTYCTQWPTL LEAIATRADE APHLRLTTVI SSRSAGSDGI ERIMREIGSR 360 MEKFARLMGV PFKFNVIHHI GDLSDLNFSQ LAIQSDEALA INLNGTLRSV SNHRRDYLIS 420 MFRSMNPKIM TIVEEEADLE VGIDGFEFLR GFQECLKWFR VYFEALNESF PQTSTERLML 480 EREAGRAVMD LVACSPANSV ERRETANRWS SRLRANGFGG VSYSEEGCDD VRALLRRYKE 540 GWSMAPSETA AGIFFDA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 1e-169 | 187 | 555 | 80 | 459 | Protein SHORT-ROOT |
5b3h_B | 1e-170 | 187 | 555 | 26 | 405 | Protein SHORT-ROOT |
5b3h_E | 1e-170 | 187 | 555 | 26 | 405 | Protein SHORT-ROOT |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. Regulates the radial organization of the shoot axial organs and is required for normal shoot gravitropism. Directly controls the transcription of SCR, and when associated with SCR, of MGP, RLK, TRI, NUC and SCL3. {ECO:0000269|PubMed:10850497, ECO:0000269|PubMed:12569126, ECO:0000269|PubMed:15314023, ECO:0000269|PubMed:16640459, ECO:0000269|PubMed:17446396, ECO:0000269|PubMed:9670559}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023751849.1 | 0.0 | protein SHORT-ROOT-like | ||||
Swissprot | Q9SZF7 | 1e-170 | SHR_ARATH; Protein SHORT-ROOT | ||||
TrEMBL | A0A2J6M4Q2 | 0.0 | A0A2J6M4Q2_LACSA; Uncharacterized protein | ||||
STRING | XP_004174016.1 | 0.0 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37650.1 | 1e-171 | GRAS family protein |