PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa001947 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | ERF | ||||||||
Protein Properties | Length: 159aa MW: 17339.1 Da PI: 8.1139 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.4 | 4.7e-20 | 76 | 125 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + + r++lg+f ta Aa+a++ a+++++g Lsa001947 76 KYRGVRRRP-WGKWAAEIRDP---N-KaSRVWLGTFNTAIAAARAYDDAALNFRG 125 8********.**********9...3.35************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 7.2E-33 | 75 | 134 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.46E-20 | 76 | 135 | No hit | No description |
SMART | SM00380 | 2.6E-36 | 76 | 139 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.25E-22 | 76 | 134 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.7E-14 | 76 | 125 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.698 | 76 | 133 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.5E-14 | 77 | 88 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.5E-14 | 115 | 135 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
GYGGSREEEM SAMVSALSHV VAGGGCSGRA GKRGREEDVH VMTQDSIIAH DQHGVADGVE 60 AATKTPREDE QQPKRKYRGV RRRPWGKWAA EIRDPNKASR VWLGTFNTAI AAARAYDDAA 120 LNFRGSKAKL NFPEDVHLVE REEHRNSCGS SGCDGAQHP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-22 | 76 | 138 | 14 | 77 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023734620.1 | 1e-115 | ethylene-responsive transcription factor ERF110-like | ||||
TrEMBL | A0A2J6KDP0 | 1e-113 | A0A2J6KDP0_LACSA; Uncharacterized protein | ||||
STRING | XP_006464539.1 | 6e-36 | (Citrus sinensis) | ||||
STRING | XP_006427894.1 | 5e-36 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 6e-29 | ethylene response factor 110 |