PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa001917
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C3H
Protein Properties Length: 355aa    MW: 39662.1 Da    PI: 8.1344
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58688877PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.32.6e-083959526
               --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                C f+++ G C yG rC++ H+
  Lsa001917 39 VCTFYQK-GACAYGIRCRYDHV 59
               5******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.587633IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-7631IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-5732IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.4323461IPR000571Zinc finger, CCCH-type
SMARTSM003560.00323660IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-53959IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.164133160IPR000571Zinc finger, CCCH-type
SMARTSM003560.15134159IPR000571Zinc finger, CCCH-type
SuperFamilySSF578509.84E-14191266No hitNo description
Gene3DG3DSA:3.30.40.103.3E-10195261IPR013083Zinc finger, RING/FYVE/PHD-type
CDDcd001622.57E-4201261No hitNo description
PROSITE profilePS5008912.475202260IPR001841Zinc finger, RING-type
SMARTSM001842.0E-7202259IPR001841Zinc finger, RING-type
PfamPF000972.4E-7202259IPR018957Zinc finger, C3HC4 RING-type
PROSITE patternPS005180226235IPR017907Zinc finger, RING-type, conserved site
PROSITE profilePS5010313.469289318IPR000571Zinc finger, CCCH-type
SMARTSM003560.17289317IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MSLPGNRTRV LCKFFAHGAC LKGEHCEFSH DWKDPANNVC TFYQKGACAY GIRCRYDHVK  60
VPQRQASASS STYPFQYAVP ESITASSTPG TASPIAVIGE LSAYTSAKPT WAEGSGQNDL  120
ISDVIGQSRS TNPADIVMCS FAAAGNCPRG ETCPHLHGDL CPTCRKQCLH PFRADEREEH  180
KMGCEKKHKH LEALKHSQEI ECSVCLERVL SKPTAAERKF GLLSECDHPF CISCIRNWRS  240
SSPTSGMDVN SALRSCPICR KLSYFVIPSV IWYATKDEKQ EIVDSYKARL RSIDCRHFDF  300
GNGTCPFGTS CFYKHAYRDG RLEEVVLRHL GAEDGQTVIA KDIRLSDFLN RMRIR
Functional Description ? help Back to Top
Source Description
UniProtE3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023766943.10.0putative RING-type E3 ubiquitin transferase C3H69
SwissprotQ5ZA071e-170C3H41_ORYSJ; E3 ubiquitin-protein ligase makorin
TrEMBLA0A2J6L6Z00.0A0A2J6L6Z0_LACSA; Uncharacterized protein
STRINGGLYMA15G42750.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G08505.21e-148C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Sahi VP, et al.
    A molecular insight into Darwin's "plant brain hypothesis" through expression pattern study of the MKRN gene in plant embryo compared with mouse embryo.
    Plant Signal Behav, 2012. 7(3): p. 375-81
    [PMID:22499205]
  3. Wadekar HB,Sahi VP,Morita EH,Abe S
    MKRN expression pattern during embryonic and post-embryonic organogenesis in rice (Oryza sativa L. var. Nipponbare).
    Planta, 2013. 237(4): p. 1083-95
    [PMID:23262670]