PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa001529
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 306aa    MW: 33534.7 Da    PI: 8.3132
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58682166PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.51.2e-1388139155
                CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                ++++h  +Er+RR+++N+ ++ Lr+l+P     + k+ + a+i e +v+YI +Lq
  Lsa001529  88 QKVSHITVERNRRKQMNENLSVLRSLMPCF---YVKRGDQASIIEGVVDYITELQ 139
                6899*************************9...9*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.04E-1385143No hitNo description
SuperFamilySSF474593.66E-1786157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.81187138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-1387142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.7E-1188139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-993144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
RKPTYILSLA AVSADDIFRV LEADLEFVSG HELKAMTSLV GGVYGVNPPM SCKSSSFDAL  60
QEVMEVPKTK RLKLSAMEDA GGYSDGQQKV SHITVERNRR KQMNENLSVL RSLMPCFYVK  120
RGDQASIIEG VVDYITELQQ ILQSLEAKKQ RKVYSEVLSP RLVSSPRALS LSPQKPHLSP  180
RPSLPISPTT PQPYMSRLPP PSPSPSTTFL TSDSANELVA ANSRSAMAEV EVKLMGGNLL  240
LKTCSKRVQG QTTKVIAVLE KLALEVLQAN ISIVDEAMVH TFTIKIGVDC QLSAEELAEH  300
IQHTFG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023769431.10.0transcription factor SPEECHLESS-like
TrEMBLA0A2J6L1D40.0A0A2J6L1D4_LACSA; Uncharacterized protein
STRINGGorai.008G270700.12e-99(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06120.18e-50bHLH family protein