PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa001100
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GATA
Protein Properties Length: 341aa    MW: 38462.7 Da    PI: 6.2718
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58685876PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-16215PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.21.1e-18233267135
       GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C +C t kTp+WR+gp g+ktLCnaCG++y++ +l
  Lsa001100 233 CLHCATDKTPQWRSGPLGPKTLCNACGVRYKSGRL 267
                99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.9E-829322IPR016679Transcription factor, GATA, plant
SMARTSM004016.5E-17227277IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.44227263IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.9E-15230291No hitNo description
Gene3DG3DSA:3.30.50.102.8E-14231265IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.08E-15232279No hitNo description
PROSITE patternPS003440233258IPR000679Zinc finger, GATA-type
PfamPF003201.7E-16233267IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
METPEFLHGS FTPEKRYTDV KTEQFIIDDL LNFPTDDTVT GEEAYDDAGD VPNGGTSTDS  60
SIVSTAIDSC HSSRELVAHR SFPDTQFSHD LCVPYDDVAE LEWLSNFVED SFSTEDMAKL  120
QLISGVKARP ADDSSETHQF QQESYNRANN PIFNTDMTVP GKARTKRSRA APCNWTSRLL  180
VLSPTSTGQT SAISSESESD IATSSIWKNN MKAPLKKKEV YENTTNNVEG RKCLHCATDK  240
TPQWRSGPLG PKTLCNACGV RYKSGRLVPE YRPAASPTFI LTKHSNSHRK VLELRRQKEV  300
QTTHLQHQQP FYHHQNMMFD VSKGEDYLIH QHIGPDYRQL I
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). Transcription activator involved in xylem formation. Functions upstream of NAC030/VND7, a master switch of xylem vessel differentiation (PubMed:25265867). {ECO:0000250|UniProtKB:Q8LAU9, ECO:0000269|PubMed:25265867}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023743095.10.0GATA transcription factor 12-like
SwissprotP697812e-89GAT12_ARATH; GATA transcription factor 12
TrEMBLA0A2J6JV220.0A0A2J6JV22_LACSA; GATA transcription factor
STRINGXP_010249552.11e-145(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.14e-90GATA transcription factor 12
Publications ? help Back to Top
  1. Ravindran P,Verma V,Stamm P,Kumar PP
    A Novel RGL2-DOF6 Complex Contributes to Primary Seed Dormancy in Arabidopsis thaliana by Regulating a GATA Transcription Factor.
    Mol Plant, 2017. 10(10): p. 1307-1320
    [PMID:28917589]