PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa000968
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C3H
Protein Properties Length: 441aa    MW: 48046 Da    PI: 7.7349
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58692059PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.25.8e-08116137426
                ---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                ++C+f+ + G C yGd+C++ H+
  Lsa000968 116 KICNFWVQ-GKCGYGDKCRYLHS 137
                79******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.112247IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.3612248IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-7112137IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315112139IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5114138IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-5115137IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-7116135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:2.130.10.102.2E-15136247IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003204.3E-4140182IPR001680WD40 repeat
SuperFamilySSF509781.92E-45145432IPR017986WD40-repeat-containing domain
PfamPF004006.8E-4147182IPR001680WD40 repeat
PROSITE profilePS5029420.909150352IPR017986WD40-repeat-containing domain
PROSITE profilePS5008213.65150191IPR001680WD40 repeat
PROSITE patternPS006780169183IPR019775WD40 repeat, conserved site
PRINTSPR003201.4E-6169183IPR020472G-protein beta WD-40 repeat
SMARTSM0032024222259IPR001680WD40 repeat
Gene3DG3DSA:2.130.10.103.6E-29248430IPR015943WD40/YVTN repeat-like-containing domain
SMARTSM003206.3E-4266303IPR001680WD40 repeat
PfamPF004000.004270303IPR001680WD40 repeat
PROSITE profilePS5008213.082273312IPR001680WD40 repeat
PROSITE patternPS006780290304IPR019775WD40 repeat, conserved site
PRINTSPR003201.4E-6290304IPR020472G-protein beta WD-40 repeat
SMARTSM003202.2E-4306343IPR001680WD40 repeat
PfamPF004000.0023308342IPR001680WD40 repeat
PRINTSPR003201.4E-6330344IPR020472G-protein beta WD-40 repeat
SMARTSM0032015347390IPR001680WD40 repeat
SMARTSM00320190393429IPR001680WD40 repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MDFDGGKRVF NRLGPSQQHN DNRNQKVCYH WRAGNCNRFP CPFLHRELSA PANGTASSKR  60
PHGFSTDDQR STTARRGGGS NFNGPNTWGR GGGRGGNAID NNNSSSKGAV FKKTEKICNF  120
WVQGKCGYGD KCRYLHSWSS ANCFAMLTQL EGHQKVVSGI ALPAGSDKLY TGSKDETVRV  180
WDCQSGQCAG VINLGGEVGC MLSEGPWMFV GLPNLVKAWN VQTSAELSLN GPVGQVYSLV  240
VGSDLLFAGV QDGNILAWRY NVATNCFEPA ASLQGHTSAV VTLVVGANRL YSGSMDKSIR  300
VWNLENLQCL QTLTDHTSVV MSVLCWDQFL LSCSLDKTIK VWAATDSGNL EVTYTHTEEH  360
GLLTLCGMHD LESKPVLLCA CNDNTVRAYD LPSFAERGKI FAKQEIRSIH GGPNIFFTGD  420
GTGEVRVWQW LADQTPQPSS A
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g6m_A2e-231474288323Tako8
6g6n_A2e-231474288323Tako8
6g6n_B2e-231474288323Tako8
6g6n_C2e-231474288323Tako8
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023755566.10.0zinc finger CCCH domain-containing protein 48-like
SwissprotQ9FNZ20.0C3H48_ARATH; Zinc finger CCCH domain-containing protein 48
TrEMBLA0A2J6LWF50.0A0A2J6LWF5_LACSA; Uncharacterized protein
STRINGXP_008377024.10.0(Malus domestica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25440.10.0zinc finger WD40 repeat protein 1