PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lsa000861 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | ERF | ||||||||
Protein Properties | Length: 252aa MW: 28442.7 Da PI: 4.5575 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 63.9 | 3.5e-20 | 13 | 63 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +ykGVr+++ +g+++Ae+rdp + krkr++lg+f+t+eeAa a+++a+ kl g Lsa000861 13 RYKGVRRRP-WGKFAAEVRDPEK--KRKRIWLGTFDTPEEAALAYDNAAFKLLG 63 7********.**********733..46************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.9E-15 | 13 | 63 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.6E-30 | 13 | 71 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.894 | 13 | 71 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-22 | 13 | 72 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.79E-30 | 13 | 71 | No hit | No description |
SMART | SM00380 | 4.5E-35 | 13 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-10 | 14 | 25 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.7E-10 | 37 | 53 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
GGGEPQRPTE WRRYKGVRRR PWGKFAAEVR DPEKKRKRIW LGTFDTPEEA ALAYDNAAFK 60 LLGSRAKVNF PLLIGVNDSP VVLASRWLAL FPQETRRKGV VEPPITTSRA EEESEITVYT 120 TTVRTNDAAT MEVGSSQDAG QLFQTDKWFI PPLIQPPESP ITVLTTTDNT TNTTTSTTDG 180 NLTRLEMGVD HDTHLDFQMF SLKPEEHSPS MVQPSATSDE ASQEEVGTDL DLLWNFDATT 240 PDDFRFLEYF RE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-25 | 12 | 74 | 4 | 66 | ATERF1 |
3gcc_A | 8e-25 | 12 | 74 | 4 | 66 | ATERF1 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 17 | 37 | RRRPWGKFAAEVRDPEKKRKR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023737644.1 | 0.0 | ethylene-responsive transcription factor 6-like | ||||
TrEMBL | A0A2U1NHW9 | 5e-87 | A0A2U1NHW9_ARTAN; DNA-binding domain-containing protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44840.1 | 5e-29 | ethylene-responsive element binding factor 13 |