PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa000787
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MIKC_MADS
Protein Properties Length: 273aa    MW: 31370.8 Da    PI: 9.7219
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58683551PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.23.4e-2679129151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                krie+ks rqv+fskRrng++KK +EL vLCd++va+ ifs +g+lye+s+
  Lsa000787  79 KRIEDKSSRQVSFSKRRNGLMKKSHELAVLCDVDVALFIFSGRGRLYEFST 129
                79***********************************************96 PP
2K-box31.48.1e-121722403299
      K-box  32 q.reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                    qRhl  ++++ L++   +qLe++L + l+ +R +K++l++  +++lq+ke +l++en  + k++e
  Lsa000787 172 ThIVQRHLEENNIKHLDIAGFNQLERHLSNFLRLVRIRKTQLMMGVVKDLQEKETQLKKENSIIMKEIE 240
                54679**********************************************************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.0E-3571130IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.50171131IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.14E-2972153IPR002100Transcription factor, MADS-box
CDDcd002653.50E-3572145No hitNo description
PRINTSPR004045.2E-277393IPR002100Transcription factor, MADS-box
PfamPF003197.5E-2480127IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-2793108IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-27108129IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.002155245IPR002487Transcription factor, K-box
PfamPF014867.6E-9174239IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MLAHKPTGVT SHVTNTXAIE PSPPYTSFTY KNPKHRVRLG ELMRLLAFWK TCDKVNSRTR  60
YRLKLKATLG MGRGKVELKR IEDKSSRQVS FSKRRNGLMK KSHELAVLCD VDVALFIFSG  120
RGRLYEFSTG ESMSKILSSY QSYKKTEEIT RMTLQEKLAS EYGDACTVDE LTHIVQRHLE  180
ENNIKHLDIA GFNQLERHLS NFLRLVRIRK TQLMMGVVKD LQEKETQLKK ENSIIMKEIE  240
AARMNENEMD EDSGDAAAEA AATPPYTDFQ VTW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P3e-1871148177Myocyte-specific enhancer factor 2B
1tqe_Q3e-1871148177Myocyte-specific enhancer factor 2B
1tqe_R3e-1871148177Myocyte-specific enhancer factor 2B
1tqe_S3e-1871148177Myocyte-specific enhancer factor 2B
5f28_A3e-1871148177MEF2C
5f28_B3e-1871148177MEF2C
5f28_C3e-1871148177MEF2C
5f28_D3e-1871148177MEF2C
6c9l_A3e-1871148177Myocyte-specific enhancer factor 2B
6c9l_B3e-1871148177Myocyte-specific enhancer factor 2B
6c9l_C3e-1871148177Myocyte-specific enhancer factor 2B
6c9l_D3e-1871148177Myocyte-specific enhancer factor 2B
6c9l_E3e-1871148177Myocyte-specific enhancer factor 2B
6c9l_F3e-1871148177Myocyte-specific enhancer factor 2B
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023740833.11e-172truncated transcription factor CAULIFLOWER A-like
TrEMBLA0A2J6MBG41e-171A0A2J6MBG4_LACSA; Uncharacterized protein
STRINGEOX997861e-46(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65050.22e-42AGAMOUS-like 31