PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa000610

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

HB-other

Protein Properties

Length: 529aa MW: 60067.1 Da PI: 6.974

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58692912	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-13777	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.4	1.2e-18	19	75	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++kR t+ q+ +Le+++++++yp++ +++eLA+++gLte+qV+ WF+ rR k+kk Lsa000610 19 KQKRIVKTPAQVAALENFYNEHKYPTEGMKQELADSIGLTEKQVSGWFCHRRLKDKK 75 67999**************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.3E-21	3	75	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.35E-17	15	79	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.892	16	76	IPR001356	Homeobox domain
SMART	SM00389	2.1E-18	18	80	IPR001356	Homeobox domain
Pfam	PF00046	3.9E-16	19	75	IPR001356	Homeobox domain
CDD	cd00086	2.89E-16	19	76	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 529 aa Download sequence Send to blast
MEEPQEVHTD ENRALPEKKQ KRIVKTPAQV AALENFYNEH KYPTEGMKQE LADSIGLTEK 60 QVSGWFCHRR LKDKKSPNDE ILPPGNGKQD RSSGVIQDRG SGLRQDSCGS TKQGDNKHSD 120 PKEVESRRFT TQNILPLQIQ HNNIIMDHHH HDVDRDDHDG NDDDDDDDTS SGSSSPLKDS 180 FHPQNVVGAI TSKYPSHDFK SVRGRGGPSG YLKVKGQVEN AAITAVKRQL GRQYREDGPP 240 LGIEFEALPP GAFENPVKIP VNQSYYVGDR SASALHSSDG SRTFQPPNAS KMYERYNPKS 300 YNSMDLDNSP LDIRHASKHR EKHFDNQCNN HNNKQTPHFS KNRHSQSMEV NDDSAEETSI 360 HDMRDHFETR IKHVHGHGPG VRRQQDSVSV SNRHLIGYGK NINHNIRPPP KVNYRDRVES 420 LTSDLTVKRG EFLELEDRGM SRKIPKDEEF DGERRGIDEY SKLVSARIHP GNEMKVTKRS 480 REEFLHQIYP RKEAVIDMPP RTIMTRPPPA QMTSSFSDDE TAETTSSAD

Sequence ? help Back to Top

Protein Sequence Length: 529 aa Download sequence Send to blast

MEEPQEVHTD ENRALPEKKQ KRIVKTPAQV AALENFYNEH KYPTEGMKQE LADSIGLTEK  60
QVSGWFCHRR LKDKKSPNDE ILPPGNGKQD RSSGVIQDRG SGLRQDSCGS TKQGDNKHSD  120
PKEVESRRFT TQNILPLQIQ HNNIIMDHHH HDVDRDDHDG NDDDDDDDTS SGSSSPLKDS  180
FHPQNVVGAI TSKYPSHDFK SVRGRGGPSG YLKVKGQVEN AAITAVKRQL GRQYREDGPP  240
LGIEFEALPP GAFENPVKIP VNQSYYVGDR SASALHSSDG SRTFQPPNAS KMYERYNPKS  300
YNSMDLDNSP LDIRHASKHR EKHFDNQCNN HNNKQTPHFS KNRHSQSMEV NDDSAEETSI  360
HDMRDHFETR IKHVHGHGPG VRRQQDSVSV SNRHLIGYGK NINHNIRPPP KVNYRDRVES  420
LTSDLTVKRG EFLELEDRGM SRKIPKDEEF DGERRGIDEY SKLVSARIHP GNEMKVTKRS  480
REEFLHQIYP RKEAVIDMPP RTIMTRPPPA QMTSSFSDDE TAETTSSAD

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023770743.1	0.0	homeobox-DDT domain protein RLT1
TrEMBL	A0A2J6KYM4	0.0	A0A2J6KYM4_LACSA; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	2e-70	HB-other family protein