PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||||||
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TF ID | Lsa000466 | ||||||||||||
Organism | |||||||||||||
Taxonomic ID | |||||||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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Family | YABBY | ||||||||||||
Protein Properties | Length: 223aa MW: 24603 Da PI: 7.6188 | ||||||||||||
Description | YABBY family protein | ||||||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 234.2 | 3.1e-72 | 16 | 187 | 3 | 170 |
YABBY 3 vfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee..lleelkveeenlksnvekeesasts..vss 98 + seq+CyvqCnfC+t+lavsvP +slf++vtvrCGhCt+llsvn++ +a ++ ++ l ++ + ++ ++++ + ++ + +++ Lsa000466 16 LSPPSEQLCYVQCNFCDTVLAVSVPCSSLFTTVTVRCGHCTNLLSVNMRALLFPASAAAVAANAAANQlhLGHNFFSPQNLMDEMRNAPSNLFINhpNPN 115 56789*****************************************999888544444433333333311222222222222222222222222201233 PP YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 e ++ + +e+p++p ++rPPekrqrvPsaynrfikeeiqrika+nPdishreafsaaaknWahfP+ihfgl Lsa000466 116 EPVTPVRIDELPKPPVANRPPEKRQRVPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 187 44455667899**999******************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.2E-72 | 19 | 187 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 3.8E-8 | 130 | 180 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 7.2E-5 | 135 | 181 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MSSSAAFSPD HHHHHLSPPS EQLCYVQCNF CDTVLAVSVP CSSLFTTVTV RCGHCTNLLS 60 VNMRALLFPA SAAAVAANAA ANQLHLGHNF FSPQNLMDEM RNAPSNLFIN HPNPNEPVTP 120 VRIDELPKPP VANRPPEKRQ RVPSAYNRFI KEEIQRIKAG NPDISHREAF SAAAKNWAHF 180 PHIHFGLMPD QPVKKPNVCQ QEGDDLLMKD GFLTTANVGV SPY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the abaxial cell fate determination during embryogenesis and organogenesis. Regulates the initiation of embryonic shoot apical meristem (SAM) development (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6, PubMed:19837869). Required during flower formation and development, particularly for the patterning of floral organs. Positive regulator of class B (AP3 and PI) activity in whorls 2 and 3. Negative regulator of class B activity in whorl 1 and of SUP activity in whorl 3. Interacts with class A proteins (AP1, AP2 and LUG) to repress class C (AG) activity in whorls 1 and 2. Contributes to the repression of KNOX genes (STM, KNAT1/BP and KNAT2) to avoid ectopic meristems. Binds DNA without sequence specificity. In vitro, can compete and displace the AP1 protein binding to DNA containing CArG box (PubMed:10323860, PubMed:10331982, PubMed:10457020, PubMed:11812777, PubMed:12417699, PubMed:9878633, Ref.3, Ref.6). {ECO:0000269|PubMed:10323860, ECO:0000269|PubMed:10331982, ECO:0000269|PubMed:10457020, ECO:0000269|PubMed:11812777, ECO:0000269|PubMed:12417699, ECO:0000269|PubMed:19837869, ECO:0000269|PubMed:9878633, ECO:0000269|Ref.3, ECO:0000269|Ref.6}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023733541.1 | 1e-165 | axial regulator YABBY 1 | ||||
Swissprot | O22152 | 3e-88 | YAB1_ARATH; Axial regulator YABBY 1 | ||||
TrEMBL | A0A2J6KG65 | 1e-164 | A0A2J6KG65_LACSA; Uncharacterized protein | ||||
STRING | VIT_15s0048g00550.t01 | 1e-123 | (Vitis vinifera) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45190.1 | 1e-86 | YABBY family protein |