PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa000445
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C3H
Protein Properties Length: 599aa    MW: 66562.8 Da    PI: 6.6403
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-8267PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.61.9e-07270290526
                --SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                +C++f++ G C++Gd C +aHg
  Lsa000445 270 PCPDFRK-GACRRGDMCEYAHG 290
                8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002041.05E-1311137No hitNo description
SuperFamilySSF484035.47E-1612139IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.4E-1515138IPR020683Ankyrin repeat-containing domain
PfamPF127963.6E-920128IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.50459167IPR020683Ankyrin repeat-containing domain
SMARTSM002480.0565989IPR002110Ankyrin repeat
PROSITE profilePS5008810.47294129IPR002110Ankyrin repeat
SMARTSM002480.01194126IPR002110Ankyrin repeat
SMARTSM003564.0E-6265291IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-5270290IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-4270292IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582270292IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-4298328IPR000571Zinc finger, CCCH-type
SMARTSM0035630300323IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 599 aa     Download sequence    Send to blast
MVMSPLTVET EDSFSSLLEY AANNDYEAFK RSIENDPSAI DEVGMWYVRK KGSKQIVLEH  60
RTPLMVASTY GSINVLKLII SQPKVDVNFA CGPDKFTALH CATSGGSPAA IEAVKLLLSV  120
GADPNLEDVN GHRPVDVIVV PPKLSGVKAS IEGLLMNNGL TLSLTMNMTG SWSPTMSSSP  180
ENGSGSCSPV MSKFENEIPV NSEKKEYPID PSLPDIKNSI YSTDEFRMFS FKVRPCSRAY  240
SHDWTECPFV HPGENARRRD PRKFHYSCVP CPDFRKGACR RGDMCEYAHG VFECWLHPAQ  300
YRTRLCKDGT SCNRRVCFFA HTQDELRPLY PSPRAMSSLE FAAAMSLIPG SPSSFTPPMS  360
PSANAMSNWQ QSSVPNVPSL LLPGSNLQSS RLRSSLNARD QDLSMFLQRS SHNQTVLEDL  420
FANETLSPRF SDQSSMFSPR NNSSVFNAFQ QQQGMLAPIN TNYTGQSMSP RSMEAISPMS  480
SRVSKLAREN QNQHQQPFRS LSSRELGSKS NTGSSVDPWS KWDSSGSGKA DWAVNADDFG  540
KVRRSSSFRE DADVSWVQNE QPQTHEVKQS EIEQMDESVL SAWIEQMQLD QLVALKKLS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023730914.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A2J6KLW80.0A0A2J6KLW8_LACSA; Uncharacterized protein
STRINGXP_009340782.10.0(Pyrus x bretschneideri)
STRINGXP_009340785.10.0(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]