PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa000265
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family GRAS
Protein Properties Length: 487aa    MW: 55122.9 Da    PI: 4.369
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58690001PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-55633PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS150.41.7e-461314862373
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                ++lL + A+a++ g++el++ ++  +se  sp g  ++R+a+ + +  +++  +        l     +e+ + +  +a+++f++++P+ +f+h+taN+ 
  Lsa000265 131 EDLLKAYADAMTMGQTELVKVIVRCISEKISPIGPVLERIAFNLFKSAENQGDE----Y---L-----KEELMRNFKSAFRAFYDIFPYGRFAHFTANSV 218
                6789999**********************************9988877777666....1...2.....22336688899********************* PP

       GRAS 102 Ileavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgE 200
                Il+av+++ e vHi+Dfd+++G+QWp+ ++a a++ +++ +l iTgv+ +e  +  +  et+++L+++A+ +gv+++ + +   +l ++   +L     E
  Lsa000265 219 ILKAVQSNvESVHIVDFDLGEGTQWPPVIEAVAQQ-RKSLTLTITGVKLEE--HDFNFTETKRQLSNYARDVGVQLKVEEVELGNLVKVMEGKL---DTE 312
                ********9************************86.55689********66..9999**********************985555555555555...48* PP

       GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPk...vvvvveqe..adh.nsesFlerflealeyysalfdsleaklpres.eerikvErellgre 293
                 la n+++ l +++  s   + +  ++Lkl k++  +   ++++ + e   ++ ns++++  f   l++y al++s+e ++p+   e+ri +E  +++++
  Lsa000265 313 FLAFNCMIGLPHMV--SIRKRTQAIKFLKLAKEILTNskgIITFGDGEngGKTvNSSNYASFFDGNLSHYKALYESMEWGIPSYLtEARIALETLFIAPS 410
                *************9..4444445589******9944333599999887655667***************************998779************* PP

       GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve.eesgslvlgWkdrpLvsvSaW 373
                i+++   ++ e  e +e+       l+  G+k  +++ +  ++a+ l+++ +   g  +  e+ +++vl W++ p+v vSaW
  Lsa000265 411 ISSLSWFQKWE--EGQEE----VVSLKGIGLKGQSMNIESWNEARELVNEREsPYGIGIGgENGNEMVLEWRGTPVVKVSAW 486
                ****9999998..33332....4789**************************44555555788999**************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098522.081104465IPR005202Transcription factor GRAS
PfamPF035146.0E-44131486IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MESELLLQTS WPTQSYFHSN LDHYDPNMDI YASYYHEFSS SINSSPENSL ISSEPYVESP  60
LLGYDQIQKP SMADDDSHNI NTLDDVCQWL CDENQEIEEI QSEKSTETES VHVWSPDLSM  120
TSDDVMETRL EDLLKAYADA MTMGQTELVK VIVRCISEKI SPIGPVLERI AFNLFKSAEN  180
QGDEYLKEEL MRNFKSAFRA FYDIFPYGRF AHFTANSVIL KAVQSNVESV HIVDFDLGEG  240
TQWPPVIEAV AQQRKSLTLT ITGVKLEEHD FNFTETKRQL SNYARDVGVQ LKVEEVELGN  300
LVKVMEGKLD TEFLAFNCMI GLPHMVSIRK RTQAIKFLKL AKEILTNSKG IITFGDGENG  360
GKTVNSSNYA SFFDGNLSHY KALYESMEWG IPSYLTEARI ALETLFIAPS ISSLSWFQKW  420
EEGQEEVVSL KGIGLKGQSM NIESWNEARE LVNERESPYG IGIGGENGNE MVLEWRGTPV  480
VKVSAWV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-1419848680374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023758271.10.0nodulation-signaling pathway 2 protein-like
TrEMBLA0A2J6LQJ70.0A0A2J6LQJ7_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.15e-19GRAS family protein