PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR12G16270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | YABBY | ||||||||
Protein Properties | Length: 195aa MW: 21417.1 Da PI: 8.4011 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 157.8 | 9.3e-49 | 6 | 166 | 5 | 170 |
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 + +e+vCyv+CnfCntilavsvP +s++++vtvrCGhCt+llsvnl+ +q a + ++ +++l+e + ++ + + e sa +s s+ LPERR12G16270.1 6 TPAEHVCYVHCNFCNTILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMQHSAPAPQ--DHHHHHLQESMSGCFRDQSGYPEFGLSAASSSSK 97 5789******************************************988755443332..2233333333333333333333333333333333 PP YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +l+ + + + ++ e+ r eei+rika+nPdishreafs+aaknWah+P+ihfgl LPERR12G16270.1 98 LRLQPPSAAAMVSYSQQNQQLEQALHL---QRRGNGEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 166 344444444444444445555544433...345567**********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 4.9E-51 | 7 | 166 | IPR006780 | YABBY protein |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MSAQITPAEH VCYVHCNFCN TILAVSVPGN SMLNIVTVRC GHCTNLLSVN LRGLMQHSAP 60 APQDHHHHHL QESMSGCFRD QSGYPEFGLS AASSSSKLRL QPPSAAAMVS YSQQNQQLEQ 120 ALHLQRRGNG EEIRRIKANN PDISHREAFS TAAKNWAHYP NIHFGLSPAH EGGKKLVEVD 180 AIPTPSSKKI QGFYS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR12G16270.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB274018 | 1e-145 | AB274018.1 Oryza sativa Japonica Group OsYABBY6 mRNA for OsYABBY6 protein, complete cds. | |||
GenBank | AK070737 | 1e-145 | AK070737.1 Oryza sativa Japonica Group cDNA clone:J023061C09, full insert sequence. | |||
GenBank | AK104918 | 1e-145 | AK104918.1 Oryza sativa Japonica Group cDNA clone:001-047-F07, full insert sequence. | |||
GenBank | CT829139 | 1e-145 | CT829139.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA051K22, full insert sequence. | |||
GenBank | FJ940195 | 1e-145 | FJ940195.1 Oryza sativa Japonica Group clone KCS385G10 YABBY protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006664216.1 | 1e-114 | PREDICTED: protein YABBY 6 | ||||
Swissprot | Q2QM17 | 1e-111 | YAB6_ORYSJ; Protein YABBY 6 | ||||
TrEMBL | A0A0D9Y1M0 | 1e-144 | A0A0D9Y1M0_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR12G16270.1 | 1e-144 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1394 | 37 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 5e-42 | YABBY family protein |