PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR12G14640.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 1115aa MW: 127835 Da PI: 7.0932 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 46 | 9.7e-15 | 68 | 150 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ffk+l s+ +++p k ae+++g+ ++ l+ +sg++W++ + +k ++ +l++GW++F++a++L+e+D ++F+ +g+s++ LPERR12G14640.1 68 FFKIL---TEDCSHGISIPEKIAERFSGEITK--GFNLKAPSGETWRIGI--EKVADELFLKSGWEDFAEAHELQEKDLLIFTCKGNSNG 150 66666...33445669**********777555..59999***********..*******************************9998776 PP | |||||||
2 | B3 | 36.2 | 1.1e-11 | 296 | 393 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelv 93 f++vl++++ ++++l++p fa++h + +++ + +++ + ++W vk+ y ++ r + W +F ++n++++g +++F+l++ ++ +++ LPERR12G14640.1 296 FVTVLKTANIRRKSLLIVPTGFADDHLDS-RSHEIVLIRQNKKEKWYVKY-YHGSTTRGFNCHRWIKFLRENRMQDGYICIFELMKGaKRVTMT 387 8899999999****************433.3444566666888*******.6555555445568*******************99877999999 PP EEEE-S CS B3 94 vkvfrk 99 v+v+ k LPERR12G14640.1 388 VHVIGK 393 999865 PP | |||||||
3 | B3 | 46.2 | 8e-15 | 422 | 504 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 ffk+l s+++++p k ae+ +g+ ++ l+ +sg++W v + +k ++ +l +GW++F+ka++L+e+D + F+ +g+s++ LPERR12G14640.1 422 FFKIL---TEDCSHCISIPEKVAERLSGEITK--GFNLKAPSGKTWCVGI--EKVADELLLMSGWEDFAKAHELQENDLLFFSCKGNSNG 504 66766...3334556***********777555..59999***********..*******************************9988776 PP | |||||||
4 | B3 | 42.8 | 9.1e-14 | 654 | 751 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 f++vl++++ ++++lv+p fa+eh + +s +++l + ++W vk+ + ++ ++++ W +F ++n+L++g +++F+l++ ++ ++ LPERR12G14640.1 654 FVTVLKTANIRRKSLLVVPSGFADEHLDS--RSHEIVLIIpNKKEKWYVKYYHGNNTRGFICH-RWFKFIRENRLQDGYICIFELMKGaKRVTM 744 8899999999****************434..34456665527779******666666666555.9*******************9987799999 PP EEEEE-S CS B3 93 vvkvfrk 99 +v+v+ k LPERR12G14640.1 745 TVHVIGK 751 9999865 PP | |||||||
5 | B3 | 46.5 | 6.7e-15 | 805 | 886 | 14 | 99 |
T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +r+++p kfa++++g+ ++ l+ sg +W v + +k ++++l +GW++F+ka++Lke+D + F+ +g+ + ++ v +f++ LPERR12G14640.1 805 HRVSIPEKFAKNFNGQIIKG--FNLKAFSGGTWHVDV--EKVADEMFLVSGWEDFAKAHELKENDLLFFTCNGKGSCSFDVLIFDA 886 789*******9887775554..9999***********..*******************************8877555578888876 PP | |||||||
6 | B3 | 47.2 | 3.9e-15 | 1009 | 1106 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sef 90 f++vl + +v+++++l++p fa++h +s +++l + ++W k+ + ++ +++ + GW +F n+L+eg +++F+l++ ++ LPERR12G14640.1 1009 FVTVLRTGHVHRKNILIVPAGFAANHLDR--KSHEIMLVRpNRKEKWYAKYYHANNTRGF-SGYGWIKFICKNKLQEGYVCIFELMKGaKRP 1097 8899999****************999444..45578887736669******767777675.677********************99877999 PP ..EEEEE-S CS B3 91 elvvkvfrk 99 +++v+v++k LPERR12G14640.1 1098 TMTVHVISK 1106 999999986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.49E-17 | 61 | 164 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.702 | 65 | 162 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 6.7E-18 | 67 | 164 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.44E-12 | 67 | 160 | No hit | No description |
Pfam | PF02362 | 1.2E-11 | 68 | 150 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.3E-7 | 68 | 162 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.1E-15 | 289 | 392 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.32E-16 | 290 | 390 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.17E-12 | 294 | 391 | No hit | No description |
Pfam | PF02362 | 1.7E-10 | 296 | 392 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.815 | 296 | 394 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 8.9E-7 | 296 | 394 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.94E-17 | 417 | 518 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 11.66 | 419 | 516 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 2.32E-13 | 421 | 514 | No hit | No description |
Pfam | PF02362 | 5.9E-12 | 422 | 504 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.6E-17 | 422 | 518 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 1.2E-8 | 422 | 516 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.4E-17 | 647 | 750 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.73E-17 | 648 | 750 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.56E-14 | 652 | 749 | No hit | No description |
PROSITE profile | PS50863 | 12.351 | 654 | 752 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.0E-12 | 654 | 750 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.8E-9 | 654 | 752 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.94E-18 | 789 | 889 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.421 | 792 | 887 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 2.6E-18 | 794 | 889 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.95E-15 | 794 | 885 | No hit | No description |
SMART | SM01019 | 4.0E-6 | 795 | 887 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.0E-11 | 805 | 886 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.4E-18 | 1001 | 1104 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.24E-18 | 1002 | 1104 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.23E-14 | 1007 | 1102 | No hit | No description |
Pfam | PF02362 | 1.8E-13 | 1009 | 1106 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.21 | 1009 | 1107 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 2.5E-13 | 1009 | 1107 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1115 aa Download sequence Send to blast |
MLSAKGKSSH SLFDPLTVLT ANFTRDQDYG NSILKKHAKV MAEKGCESCS RWQEHFYREH 60 MDVSRIRFFK ILTEDCSHGI SIPEKIAERF SGEITKGFNL KAPSGETWRI GIEKVADELF 120 LKSGWEDFAE AHELQEKDLL IFTCKGNSNG ICSFDVLIFD ASGCEKVSCF FTGKTDSYMF 180 KNFNNTDGQD AEQYLLSDSE DTNTPPYLVV SPHKGSTSIK LSGKTKNSPR KEPEDPNSSR 240 CHVKHDMIEE EDNDYDEHTD DEHDDYSYSR FASYLNVKER KQIFSLVSLQ PGNPVFVTVL 300 KTANIRRKSL LIVPTGFADD HLDSRSHEIV LIRQNKKEKW YVKYYHGSTT RGFNCHRWIK 360 FLRENRMQDG YICIFELMKG AKRVTMTVHV IGKVMAEKVC ASCSKWQEHC YREHMDVCRI 420 RFFKILTEDC SHCISIPEKV AERLSGEITK GFNLKAPSGK TWCVGIEKVA DELLLMSGWE 480 DFAKAHELQE NDLLFFSCKG NSNGICSFDV LIFDASGCEK LSCFFISKKY SYICKHFNNT 540 DSQNAEQYLS SDCEDTNTPP YLLGSPHKDS TSKKLSGKTK TNPSTSTGKE PEDPNSSRCH 600 VKHEMIEEEE SDDDEHTDDE HDDYSYSRFA SYLNSKERKQ IFSLVSLQPG NPVFVTVLKT 660 ANIRRKSLLV VPSGFADEHL DSRSHEIVLI IPNKKEKWYV KYYHGNNTRG FICHRWFKFI 720 RENRLQDGYI CIFELMKGAK RVTMTVHVIG KVDNRNVCGA LYDAGEVMAD KGCESCSKWQ 780 EHYYREHTDG SRICFFRLMT GDFAHRVSIP EKFAKNFNGQ IIKGFNLKAF SGGTWHVDVE 840 KVADEMFLVS GWEDFAKAHE LKENDLLFFT CNGKGSCSFD VLIFDASGCE KMPDFFTSKK 900 YNYMCKHFNN ISGQNVEHCL LSDSDDTSTP SYMAGSHKAA TSKKVNGKTK ISPSKEPENV 960 KQEMIEEEES DGDDEHVDYY YSRFANYLTS EEREEIFSLT SLQPGNPVFV TVLRTGHVHR 1020 KNILIVPAGF AANHLDRKSH EIMLVRPNRK EKWYAKYYHA NNTRGFSGYG WIKFICKNKL 1080 QEGYVCIFEL MKGAKRPTMT VHVISKINNR FVLLG |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR12G14640.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619600.1 | 0.0 | B3 domain-containing protein Os12g0592300 isoform X2 | ||||
Swissprot | Q2QMT2 | 0.0 | Y1223_ORYSJ; B3 domain-containing protein Os12g0592300 | ||||
TrEMBL | A0A0D9Y111 | 0.0 | A0A0D9Y111_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR12G14640.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP562 | 34 | 179 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G33280.1 | 6e-25 | B3 family protein |