PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G14620.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family B3
Protein Properties Length: 339aa    MW: 39296 Da    PI: 7.5997
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G14620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.51.6e-15125206688
                      ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.S CS
               B3   6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.s 88 
                      +++ +++ g l ++k++a ++ + k+es  ++l +  g ++We++l  + + ++ y l++GW+eF k+ +L+egD+++F+ +++  
  LPERR12G14620.1 125 MHKATMADGSLAISKDYAVKYHLHKNES--IRLCHYGGsKTWEINL--DINTDGpYALSTGWSEFIKDSKLQEGDICLFEASENeI 206
                      5667788899***********9998886..888886666*******..8888888*************************876633 PP
2B350.73.3e-162323201299
                      HTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  12 ksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      +++++ +++++a+++   ++ ++t++l+   ++ +We  + +  r ++++ +l +GWk+Fv +n+L+ gD+++F+l++++e +++v+++rk
  LPERR12G14620.1 232 TLCIMAFSREYAKKYL--PNLDQTIRLQLpGKNTTWETAFEIkrRINKQTRWLVRGWKQFVYDNKLEIGDICLFQLMKDEEVTMTVHIIRK 320
                      568899999***9994..34667999999445599*9999665677788899*************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.8E-18113213IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-17114205IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.97120218IPR003340B3 DNA binding domain
SMARTSM010199.0E-6121218IPR003340B3 DNA binding domain
PfamPF023621.5E-12124207IPR003340B3 DNA binding domain
CDDcd100171.80E-10133216No hitNo description
SMARTSM010192.6E-6229321IPR003340B3 DNA binding domain
SuperFamilySSF1019366.02E-18232320IPR015300DNA-binding pseudobarrel domain
CDDcd100171.42E-15232319No hitNo description
Gene3DG3DSA:2.40.330.102.7E-17234321IPR015300DNA-binding pseudobarrel domain
PfamPF023625.1E-14234320IPR003340B3 DNA binding domain
PROSITE profilePS5086311.956236321IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MEKLHAVCKS YVADYYWLHM DDHEKSFIKF MIGGYKNSMT IPEKFSRNLR GKISGIVKLE  60
TRNAQNVLSS EEIEESADSG GVQNSTKPFY CLVTMSSNMT SEQKAVVDAL QEDIKPQIPF  120
YITAMHKATM ADGSLAISKD YAVKYHLHKN ESIRLCHYGG SKTWEINLDI NTDGPYALST  180
GWSEFIKDSK LQEGDICLFE ASENEIGMKL TFHPFKGKHR SKTPDRDDIP TTLCIMAFSR  240
EYAKKYLPNL DQTIRLQLPG KNTTWETAFE IKRRINKQTR WLVRGWKQFV YDNKLEIGDI  300
CLFQLMKDEE VTMTVHIIRK EQDSWFRFLT PINHLQETL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G14620.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664156.17e-78PREDICTED: B3 domain-containing protein LOC_Os12g40080-like
SwissprotQ2QMT76e-96Y1214_ORYSJ; B3 domain-containing protein Os12g0591400
TrEMBLA0A0D9Y1090.0A0A0D9Y109_9ORYZ; Uncharacterized protein
STRINGLPERR12G14620.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-13B3 family protein