PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR12G13690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | MYB | ||||||||
Protein Properties | Length: 338aa MW: 38422 Da PI: 10.4826 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.5 | 4e-15 | 6 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwqkyl 48 r+rW +eEd +l+ +v+q+G++ W++++ +m+ + R +k+c +rw +yl LPERR12G13690.1 6 RQRWRPEEDAILLSYVRQYGPREWNLVSTRMNaaLDRDAKSCLERWKNYL 55 89**********************************************97 PP | |||||||
2 | Myb_DNA-binding | 34.1 | 6.3e-11 | 61 | 105 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+ T +E+ l +++ +++G++ Wk+Ia++++ gRt+k + +w + LPERR12G13690.1 61 KGSLTDDEQRLVIRLQAKHGNK-WKKIAAEVP-GRTAKRLGKWWEVF 105 57789*****************.*********.*****999999766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.42 | 1 | 55 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-12 | 5 | 57 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.11E-20 | 6 | 100 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.94E-7 | 8 | 55 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.5E-20 | 8 | 62 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 5.2E-14 | 9 | 70 | No hit | No description |
PROSITE profile | PS51294 | 22.391 | 56 | 110 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-9 | 60 | 108 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.3E-15 | 63 | 104 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.03E-5 | 65 | 106 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008356 | Biological Process | asymmetric cell division | ||||
GO:0009615 | Biological Process | response to virus | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009739 | Biological Process | response to gibberellin | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010338 | Biological Process | leaf formation | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045088 | Biological Process | regulation of innate immune response | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0000793 | Cellular Component | condensed chromosome | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 338 aa Download sequence Send to blast |
MQMRERQRWR PEEDAILLSY VRQYGPREWN LVSTRMNAAL DRDAKSCLER WKNYLRPGIK 60 KGSLTDDEQR LVIRLQAKHG NKWKKIAAEV PGRTAKRLGK WWEVFKEKQQ REIRDSRRPP 120 PEPSPDERGR YDWLLENFAE KIVKERPVAV ATVAPLLMAT PMLPPWMSSP APPPPSPSVT 180 LSLASSAAAA AAAPPSVPPP SAPAPWLQPP HQPPPPPSGE AIGELVECVR ELEEGHRAWA 240 AQRKEAAWRL KRVELQLESE RAARRREAAE EFEAKVRALR EEQAAAVERA DAEFRDRMAG 300 LRRDAEIKEQ KMAEQWAAKH ARLAKFLDHF AAGGAGRR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 3e-15 | 9 | 103 | 7 | 98 | MYB PROTO-ONCOGENE PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for normal cell differentiation. May interact with other proteins to repress the knox homeobox genes (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR12G13690.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020182147.1 | 1e-157 | protein rough sheath 2 | ||||
Swissprot | Q94IB1 | 1e-141 | RS2_ORYSJ; Protein rough sheath 2 homolog | ||||
TrEMBL | A0A0D9Y0M5 | 0.0 | A0A0D9Y0M5_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR12G13690.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5190 | 36 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37630.1 | 2e-66 | MYB family protein |