PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G08380.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 389aa    MW: 42914.4 Da    PI: 4.8369
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G08380.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM66.38.9e-21101302128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       +G+rF+P+ +e+v++yL + v++ + +    i+ +d+y +eP+dL +     +++++ + +fF++ ++ +    r +r++  g+W ++ + k+
  LPERR12G08380.1  10 EAGYRFSPSPQEVVTFYLPRLVANITDPY---IHIADVYAAEPKDLARdfapVASSSNGDRWFFTQCRRIK---GRVQRTAGGGTWVSQSN-KD 96 
                      68*********************999666...9999**********8546653333444667888887764...5999*99*****98865.99 PP

              NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++ g+++g  k + f ++++   ++tdW+m+ey+l
  LPERR12G08380.1  97 IKNTAGSKIGETKNFRFKNNDR---KNTDWLMDEYHL 130
                      9999*************84433...47********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-238149IPR003441NAC domain
PROSITE profilePS5100527.4289149IPR003441NAC domain
PfamPF023651.3E-1411130IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MATNLDFLLE AGYRFSPSPQ EVVTFYLPRL VANITDPYIH IADVYAAEPK DLARDFAPVA  60
SSSNGDRWFF TQCRRIKGRV QRTAGGGTWV SQSNKDIKNT AGSKIGETKN FRFKNNDRKN  120
TDWLMDEYHL CRGQQAGDLE PVVCRIYVSP RAASDSAVHQ ESAALPRPQE VAAPLVPAPA  180
TITQKQQQAA PVKRPAASAQ IANKPLPRQE LAPPLVPAPT TLMKQQVAPL KRPAVLAPVV  240
ETPPCSKKMR GPASAMPSRR VMAPLTPLPP MPTYRAIDPF EQPPQPLPQE SSNQKPVDAA  300
PAPKENGAER DNEVNDFAEL EKLLFPDGVE VALPVASDEE PHYFSNEDMD DLWRLMDDKI  360
EEAANADNGS EGDDMSEFAR LLEEELFPN
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G08380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619209.12e-84proteoglycan 4
TrEMBLA0A0D9XYT20.0A0A0D9XYT2_9ORYZ; Uncharacterized protein
STRINGLPERR12G08380.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.11e-09NAC domain containing protein 90