PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G08370.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 430aa    MW: 47896.1 Da    PI: 4.4817
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G08370.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM61.62.6e-19101292128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                       +G+rF+Pt  e+v++yL + v++ + +    ++++d+y +eP+dL +     +++++ + +fF++ ++ +    r +r++  g+W ++ + ++
  LPERR12G08370.1  10 EVGYRFSPTPFEVVTFYLPRLVANITDPS---FHRADVYAAEPKDLARdfapVANSSNGDRWFFTQCRRIK---GRVQRTAGGGTWVSQTN-RA 96 
                      68*********************999777...89************8546653344444667888887765...5999*99*****98865.99 PP

              NAM  92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                      ++++ g+++g  k + f     ++++ tdW+m+ey+l
  LPERR12G08370.1  97 IKNSAGSKIGQTKNFRFK----KNAKYTDWLMDEYHL 129
                      9999*************8....45568********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.02E-227148IPR003441NAC domain
PROSITE profilePS5100525.6649148IPR003441NAC domain
PfamPF023652.3E-1311129IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 430 aa     Download sequence    Send to blast
MEASLDFLLE VGYRFSPTPF EVVTFYLPRL VANITDPSFH RADVYAAEPK DLARDFAPVA  60
NSSNGDRWFF TQCRRIKGRV QRTAGGGTWV SQTNRAIKNS AGSKIGQTKN FRFKKNAKYT  120
DWLMDEYHLF GPQQASDLEP VVCRIYVSPR ADRDSATHQE SAALLRPQEV AAPLVPAPVT  180
ITQQQQAPPL KRPAMSAPVV EKPPSAKVPL PRQELAAPFL PAPMTMTKQQ VAPLKRPAVP  240
FAETPPCPQK MRGPASAMCV MALPAPPPMT TYRPIDPFEQ PPQPLPQESS NLKPMDAAHA  300
PNKNGAERDN EIDDFTEFEK MLFPDDDEVA VAVSPPVVQT VAPNDNEPHE FSNEDMDDLW  360
KLMDDKTEKA VDAGNGCEGD DMKEFARFLE DGLLPNDDKI LDVFDGMDDE PLDNDFLNVP  420
LQDYDDKLIF
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G08370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9XYT10.0A0A0D9XYT1_9ORYZ; Uncharacterized protein
STRINGLPERR12G08370.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.11e-12NAC domain containing protein 90