PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR12G08360.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | C3H | ||||||||
Protein Properties | Length: 450aa MW: 48171.1 Da PI: 8.3282 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.5 | 1.7e-11 | 66 | 91 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C++++rtG C++G +CkF+H+p LPERR12G08360.1 66 GEPDCSYYMRTGLCRFGMTCKFNHPP 91 5799********************97 PP | |||||||
2 | zf-CCCH | 38.8 | 1.6e-12 | 112 | 136 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tGtCk+G++CkF+H++ LPERR12G08360.1 112 QPECQYYLKTGTCKFGATCKFHHPR 136 799********************96 PP | |||||||
3 | zf-CCCH | 31 | 4.2e-10 | 158 | 182 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+ ++CkF+H++ LPERR12G08360.1 158 EKECAYYLRTGQCKFASTCKFHHPQ 182 679********************97 PP | |||||||
4 | zf-CCCH | 39.5 | 9.3e-13 | 316 | 341 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ CkF+H++ LPERR12G08360.1 316 DQPECQFYMKTGDCKFGAVCKFHHPK 341 689*********************96 PP | |||||||
5 | zf-CCCH | 37.5 | 4e-12 | 361 | 387 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C f++r+G+Ck+G++CkF H++ LPERR12G08360.1 361 PGEPVCTFYSRYGICKFGPNCKFDHPM 387 5789*********************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 3.6E-5 | 64 | 91 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.535 | 64 | 92 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 5.9E-9 | 66 | 91 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-5 | 68 | 92 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.7E-4 | 70 | 90 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.7E-6 | 109 | 136 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.441 | 109 | 137 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.7E-6 | 111 | 138 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.5E-10 | 112 | 136 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.2E-5 | 115 | 137 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.93E-6 | 154 | 183 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.0E-4 | 155 | 182 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.286 | 155 | 183 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.2E-7 | 158 | 182 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 4.7E-5 | 314 | 341 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.511 | 314 | 342 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.3E-9 | 316 | 341 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.1E-5 | 317 | 344 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.0E-5 | 320 | 342 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.8E-7 | 360 | 387 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.99 | 360 | 388 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.7E-9 | 362 | 387 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.41E-6 | 364 | 389 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.8E-4 | 365 | 385 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0017148 | Biological Process | negative regulation of translation | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0010313 | Molecular Function | phytochrome binding | ||||
GO:0046872 | Molecular Function | metal ion binding | ||||
GO:0048027 | Molecular Function | mRNA 5'-UTR binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MAAGAGAGVG GGEGGAGNGG GVTSPATAAA AIGTHHLGVA AAEEAMWQMT LGGESIESAP 60 YPERLGEPDC SYYMRTGLCR FGMTCKFNHP PNRKLAVAAA RMNGEYPYRV GQPECQYYLK 120 TGTCKFGATC KFHHPREKAA LATRVQLNVL GYPMRPSEKE CAYYLRTGQC KFASTCKFHH 180 PQPSNTMVAV RSSMYSPGQS ATSPGQPTYP GVTNWTMSRS ASFIASPRWP GHSGYAQVIV 240 PQGLVQVPGW NPYAAQMGSS SPDDQQRTPV TTQYYGSRQN ETAGMGDHGV FQSYQAGSVP 300 VGVYVQGENV FPERPDQPEC QFYMKTGDCK FGAVCKFHHP KERLVPAPNC ALNSLGLPLR 360 PGEPVCTFYS RYGICKFGPN CKFDHPMGTL MYGSATSPTG DVSSMHYQLS PSPGHSGRLL 420 DGGSGRSHRV PQSDSQQIPS GDGNAEREAS |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR12G08360.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK111511 | 0.0 | AK111511.1 Oryza sativa Japonica Group cDNA clone:J013001J05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006663969.1 | 0.0 | PREDICTED: zinc finger CCCH domain-containing protein 66 isoform X1 | ||||
Swissprot | Q2QT65 | 0.0 | C3H66_ORYSJ; Zinc finger CCCH domain-containing protein 66 | ||||
TrEMBL | A0A0D9XYT0 | 0.0 | A0A0D9XYT0_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR12G08360.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1153 | 38 | 132 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-153 | zinc finger protein 1 |
Publications ? help Back to Top | |||
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