PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G03580.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Trihelix
Protein Properties Length: 379aa    MW: 43317.1 Da    PI: 6.429
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G03580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix833.8e-2668164186
         trihelix   1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 
                      +Wt+++v++Li+a+++++e+ ++++          +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ +++ +++++++d
  LPERR12G03580.1  68 KWTDSMVKLLITAVSYTGEDPGADSgagrrnsammQKKGKWKAISKVMGERGCNVSPQQCEDKFNDLNKRYKRLTDILGRGtACKIVENHALLD 161
                      7*********************9877778888999**********************************************5599999999998 PP

         trihelix  84 qle 86 
                       ++
  LPERR12G03580.1 162 CMN 164
                      886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.5E-2066190No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MHVNQSTDSD HLSEFQFGEL GKADHHHHHH HHHTKNGMSD DEDHGVNEDA TDSQSGKGKK  60
GSAWQRMKWT DSMVKLLITA VSYTGEDPGA DSGAGRRNSA MMQKKGKWKA ISKVMGERGC  120
NVSPQQCEDK FNDLNKRYKR LTDILGRGTA CKIVENHALL DCMNNLSDKM KDDARKILSS  180
KHLFYEEMCS YHNNNRVSLP EDPALQRALQ LALRCKEEHD LKRGISGDAD EDDQSSDSDS  240
EEENDEEHYM LQGDKSAMPM HKRLRYMPDQ EDVGFGNSSS SHGCSRRSDS HGITLDINRA  300
FPDGTNLALV QKDLATQSAD LEEKRLQIEV QAVYLAKRRL KWERFSKSKD RELEQMRLEN  360
ERMKLENKRL ELDVTDGFW
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G03580.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1031220.0AK103122.1 Oryza sativa Japonica Group cDNA clone:J033119K12, full insert sequence.
GenBankAL7139360.0AL713936.4 Oryza sativa chromosome 12, . BAC OJ1057_G11 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015698803.10.0PREDICTED: uncharacterized protein LOC102711209
RefseqXP_015698804.10.0PREDICTED: uncharacterized protein LOC102711209
TrEMBLA0A0D9XX540.0A0A0D9XX54_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9XX560.0A0A0D9XX56_9ORYZ; Uncharacterized protein
STRINGLPERR12G03580.20.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76870.11e-82