PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR12G03230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | bZIP | ||||||||
Protein Properties | Length: 203aa MW: 22177 Da PI: 8.488 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 34.4 | 4.7e-11 | 126 | 188 | 1 | 63 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 eke kr rr NRe+Ar +R++a +eL++kv+ L+++N+++kke e+ +e+ +lk + LPERR12G03230.1 126 EKEAKRLRRVLANRESARQTILRRQAIRDELARKVADLSTQNESMKKERETVMQEYLSLKETN 188 89**********************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 4.7E-6 | 123 | 191 | No hit | No description |
SMART | SM00338 | 1.9E-12 | 126 | 190 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 8.7E-10 | 126 | 189 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.14 | 128 | 191 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.05E-7 | 130 | 186 | No hit | No description |
CDD | cd14702 | 4.84E-11 | 131 | 181 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MSEYGDEQQQ RQCHRRRGGD VAPVDVVELG AALALADMAG AVAAKKAVAA APPPPMMQDE 60 DEEMATTRLS LQLGNNSNNI HSSSCSSSGS SAGRPAPPPP PPAANVTATS SGYGCIKPRQ 120 MLTEEEKEAK RLRRVLANRE SARQTILRRQ AIRDELARKV ADLSTQNESM KKERETVMQE 180 YLSLKETNKQ LKEQAHHLSL SLF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR12G03230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006663833.1 | 3e-76 | PREDICTED: G-box-binding factor 1-like | ||||
TrEMBL | A0A0D9XX20 | 1e-146 | A0A0D9XX20_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR12G03230.1 | 1e-147 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3165 | 34 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19490.1 | 3e-18 | bZIP family protein |