PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR12G03220.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

NAC

Protein Properties

Length: 287aa MW: 30586 Da PI: 7.1791

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR12G03220.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	129.1	3.4e-40	5	143	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 +pGfrF Pt+eel+v+yL ++++g++ e+++vi+ vd+y ++P++L + + + ++++w+fF++r++++ +g r+ r+t sgyWkatg+ LPERR12G03220.1 5 TPGFRFYPTEEELIVFYLGHRLAGTRhDEIARVIPAVDVYAYHPSQLAAmageA-SVgDKEQWFFFCPRAERELHGGRAARTTPSGYWKATGSP 97 69*******************9993445667**********8434532.2235669**************************** PP NAM 90 kevlsk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s+ +++ +g+k+t+vfy+grap+g+kt+W m+ey++ LPERR12G03220.1 98 SFVFSSgaggattTTKIIGVKRTMVFYHGRAPTGTKTRWKMNEYKA 143 *988777766666*************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.19E-41	4	182	IPR003441	NAC domain
PROSITE profile	PS51005	43.291	4	183	IPR003441	NAC domain
Pfam	PF02365	4.8E-22	6	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MATTTPGFRF YPTEEELIVF YLGHRLAGTR HDEIARVIPA VDVYAYHPSQ LAAMAGEASV 60 GDKEQWFFFC PRAERELHGG RAARTTPSGY WKATGSPSFV FSSGAGGATT TTKIIGVKRT 120 MVFYHGRAPT GTKTRWKMNE YKAAAVADDG DNSGTAPPPP MISNPNLCVR LRNEMSVCRV 180 YVSTGTLRSF DRRPGGLDTT AAAAPSTAGH DRRPPRRVMS AATATANANL AGGAQEDSHD 240 SATSSEEAAI DYWSSLMAAE NSGAGAGDFS LSDIDFSSCV AGSWPQV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-29	6	142	19	141	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-29	6	142	19	141	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-29	6	142	19	141	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-29	6	142	19	141	NO APICAL MERISTEM PROTEIN
3swm_A	4e-29	6	142	22	144	NAC domain-containing protein 19
3swm_B	4e-29	6	142	22	144	NAC domain-containing protein 19
3swm_C	4e-29	6	142	22	144	NAC domain-containing protein 19
3swm_D	4e-29	6	142	22	144	NAC domain-containing protein 19
3swp_A	4e-29	6	142	22	144	NAC domain-containing protein 19
3swp_B	4e-29	6	142	22	144	NAC domain-containing protein 19
3swp_C	4e-29	6	142	22	144	NAC domain-containing protein 19
3swp_D	4e-29	6	142	22	144	NAC domain-containing protein 19
4dul_A	4e-29	6	142	19	141	NAC domain-containing protein 19
4dul_B	4e-29	6	142	19	141	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR12G03220.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC112209	2e-84	AC112209.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0030I09 map C83B, complete sequence.
GenBank	AK106277	2e-84	AK106277.1 Oryza sativa Japonica Group cDNA clone:002-100-H06, full insert sequence.
GenBank	AK109939	2e-84	AK109939.1 Oryza sativa Japonica Group cDNA clone:002-154-A12, full insert sequence.
GenBank	AP014967	2e-84	AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBank	CP012619	2e-84	CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619441.1	1e-102	NAC domain-containing protein 90
Swissprot	Q9FMR3	3e-64	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A0D9XX19	0.0	A0A0D9XX19_9ORYZ; Uncharacterized protein
STRING	LPERR12G03220.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1005	38	140

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	1e-62	NAC domain containing protein 90

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]