PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR12G03220.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 287aa    MW: 30586 Da    PI: 7.1791
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR12G03220.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM129.13.4e-4051432128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                      +pGfrF Pt+eel+v+yL ++++g++  e+++vi+ vd+y ++P++L +    + +  ++++w+fF++r++++ +g r+ r+t sgyWkatg+ 
  LPERR12G03220.1   5 TPGFRFYPTEEELIVFYLGHRLAGTRhDEIARVIPAVDVYAYHPSQLAAmageA-SVgDKEQWFFFCPRAERELHGGRAARTTPSGYWKATGSP 97 
                      69*********************9993445667**************8434532.2235669******************************** PP

              NAM  90 kevlsk.......kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        v+s+       +++ +g+k+t+vfy+grap+g+kt+W m+ey++
  LPERR12G03220.1  98 SFVFSSgaggattTTKIIGVKRTMVFYHGRAPTGTKTRWKMNEYKA 143
                      *****988777766666***************************85 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.19E-414182IPR003441NAC domain
PROSITE profilePS5100543.2914183IPR003441NAC domain
PfamPF023654.8E-226142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MATTTPGFRF YPTEEELIVF YLGHRLAGTR HDEIARVIPA VDVYAYHPSQ LAAMAGEASV  60
GDKEQWFFFC PRAERELHGG RAARTTPSGY WKATGSPSFV FSSGAGGATT TTKIIGVKRT  120
MVFYHGRAPT GTKTRWKMNE YKAAAVADDG DNSGTAPPPP MISNPNLCVR LRNEMSVCRV  180
YVSTGTLRSF DRRPGGLDTT AAAAPSTAGH DRRPPRRVMS AATATANANL AGGAQEDSHD  240
SATSSEEAAI DYWSSLMAAE NSGAGAGDFS LSDIDFSSCV AGSWPQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-29614219141NO APICAL MERISTEM PROTEIN
1ut4_B4e-29614219141NO APICAL MERISTEM PROTEIN
1ut7_A4e-29614219141NO APICAL MERISTEM PROTEIN
1ut7_B4e-29614219141NO APICAL MERISTEM PROTEIN
3swm_A4e-29614222144NAC domain-containing protein 19
3swm_B4e-29614222144NAC domain-containing protein 19
3swm_C4e-29614222144NAC domain-containing protein 19
3swm_D4e-29614222144NAC domain-containing protein 19
3swp_A4e-29614222144NAC domain-containing protein 19
3swp_B4e-29614222144NAC domain-containing protein 19
3swp_C4e-29614222144NAC domain-containing protein 19
3swp_D4e-29614222144NAC domain-containing protein 19
4dul_A4e-29614219141NAC domain-containing protein 19
4dul_B4e-29614219141NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR12G03220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1122092e-84AC112209.4 Oryza sativa Japonica Group cultivar Nipponbare chromosome 11 clone OSJNBb0030I09 map C83B, complete sequence.
GenBankAK1062772e-84AK106277.1 Oryza sativa Japonica Group cDNA clone:002-100-H06, full insert sequence.
GenBankAK1099392e-84AK109939.1 Oryza sativa Japonica Group cDNA clone:002-154-A12, full insert sequence.
GenBankAP0149672e-84AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence.
GenBankCP0126192e-84CP012619.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 11 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619441.11e-102NAC domain-containing protein 90
SwissprotQ9FMR33e-64NAC90_ARATH; NAC domain-containing protein 90
TrEMBLA0A0D9XX190.0A0A0D9XX19_9ORYZ; Uncharacterized protein
STRINGLPERR12G03220.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP100538140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.11e-62NAC domain containing protein 90
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]