PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR12G01070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | WRKY | ||||||||
Protein Properties | Length: 281aa MW: 31680.6 Da PI: 6.4411 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 61 | 2.2e-19 | 122 | 186 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST....TEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp....kvveitYegeHnhe 59 +Dg++WrKYGqK++ s+++rsY+rC+ + gCp++k v++ ++ + k++++ Y g+H+++ LPERR12G01070.1 122 SDGHQWRKYGQKSISRSTHSRSYFRCANSkvqGCPATKTVQQMNSSGngasKLFNVDYYGQHTCR 186 7*************************9887889********9987652233699********995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.7E-22 | 107 | 186 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 14.688 | 116 | 166 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-19 | 117 | 186 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.5E-28 | 121 | 187 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.8E-22 | 123 | 186 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MKILESFVHS DFQVVINMIE HQKALMVELH GIVMPILPSG NEQTKLAVQL LGDILSCSDK 60 AISMLELSGD TNKLTNIVGG KRRSDKHSME NQNLEEEPKE SGNKRRKNAE HTGSTVAQAP 120 HSDGHQWRKY GQKSISRSTH SRSYFRCANS KVQGCPATKT VQQMNSSGNG ASKLFNVDYY 180 GQHTCRGDGI ANPYVVDTAD HSMEPINQTK CNSPMPEHEV HGVQDERFQN LCMVPNTPDY 240 LIEFEMERAF EFTMNSPLDS EHWMFNESMR CEQSPICIWG S |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR12G01070.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102093 | 0.0 | AK102093.1 Oryza sativa Japonica Group cDNA clone:J033083A06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015616437.1 | 1e-178 | probable WRKY transcription factor 67 | ||||
TrEMBL | A0A0D9XWA1 | 0.0 | A0A0D9XWA1_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR12G01070.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13325 | 15 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46400.1 | 1e-16 | WRKY DNA-binding protein 46 |