PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR11G13310.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | GRF | ||||||||
Protein Properties | Length: 388aa MW: 42376.3 Da PI: 8.835 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 72 | 6.7e-23 | 142 | 185 | 2 | 45 |
WRC 2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 ep+rCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e LPERR11G13310.1 142 VEPRRCRRTDGKKWRCSRDAVGDQKYCERHINRGRHRSRKHVEG 185 59***************************************996 PP | |||||||
2 | QLQ | 58.2 | 2.4e-20 | 89 | 125 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yK++aan+ vP+ Ll++i++ LPERR11G13310.1 89 GPFTPTQWMELEHQALIYKHIAANVSVPSSLLLPIRR 125 59*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 5.4E-12 | 89 | 125 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 1.0E-14 | 90 | 124 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 22.888 | 90 | 125 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 24.136 | 141 | 185 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.3E-19 | 143 | 184 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 388 aa Download sequence Send to blast |
MLSSYCGGNG RCDEQGGQQQ DGFLVREARA SPPPHPSSSS FLGSTRSSGR GGQMLSFSPN 60 ETAVCLSCDG GFGLSSGGSM QGVLARVRGP FTPTQWMELE HQALIYKHIA ANVSVPSSLL 120 LPIRRSLHPW GWGSFPPGCA DVEPRRCRRT DGKKWRCSRD AVGDQKYCER HINRGRHRSR 180 KHVEGRKATL TIAEPPMVIA SGVSSRSYNV ARQKQVKTSA TNVTDPFSRQ SNRKFLEKQN 240 AVDQLSPMDS FDFSSTQSSP NYDNVALSPL NLHHDHDESY IGQGAASSSE KGNMLHESRL 300 TVSKETLDDG PLGEVFKRKN CELSSANILN DKWTEGPNSH CPAGILQMAT KFNSMSSSNT 360 VNGGGTALEN RITDNGYLMY PHIVSTLL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR11G13310.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK103055 | 0.0 | AK103055.1 Oryza sativa Japonica Group cDNA clone:J033117J15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015615703.1 | 0.0 | growth-regulating factor 8 | ||||
Swissprot | Q6AWY1 | 0.0 | GRF8_ORYSJ; Growth-regulating factor 8 | ||||
TrEMBL | A0A0D9XT20 | 0.0 | A0A0D9XT20_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR11G13310.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12960 | 27 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 3e-37 | growth-regulating factor 2 |
Publications ? help Back to Top | |||
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