PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LPERR11G10970.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 139aa MW: 15228.4 Da PI: 9.6729 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 51.6 | 3.2e-16 | 64 | 137 | 43 | 115 |
NAM 43 ePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.....kgelvglkktLvfykgrapk 115 +P + + +e++ +fF+++++k++ +k++nra+ +g+W++tg++ +v+ k ++ lvg+k+tLvfy+g++++ LPERR11G10970.2 64 HPTEVQ----EEKNGKHFFTRKENKNPGDKHRNRAAGDGFWRSTGSEVPVYYKpsgggDDMLVGMKRTLVFYRGKSSS 137 555554....567799************************************9998777777**********999865 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 14.375 | 19 | 139 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 9.42E-16 | 53 | 138 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-6 | 64 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 139 aa Download sequence Send to blast |
MHESRLVGVG YLPCPVMTRT ISNGLGPPYS CLEAKIAMTM VNGGVCITLV NGSTMHLPIG 60 SIFHPTEVQE EKNGKHFFTR KENKNPGDKH RNRAAGDGFW RSTGSEVPVY YKPSGGGDDM 120 LVGMKRTLVF YRGKSSSSY |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LPERR11G10970.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015697669.1 | 2e-32 | PREDICTED: NAC transcription factor NAM-B1-like | ||||
TrEMBL | A0A0D9XS54 | 3e-99 | A0A0D9XS54_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR08G06230.1 | 2e-43 | (Leersia perrieri) | ||||
STRING | LPERR11G11970.1 | 1e-43 | (Leersia perrieri) | ||||
STRING | LPERR11G11980.1 | 1e-43 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G62380.1 | 6e-12 | NAC-domain protein 101 |