PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G09550.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 285aa    MW: 31612.1 Da    PI: 8.1563
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G09550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM110.12.5e-34181481128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppG+rF+Pt+e l+v+yL +++ + +l++ e+i++++i++++P+d+    +++++  +fF+++  ky+ g+r+nr++ +g W+atg++ ++++
  LPERR11G09550.1  18 LPPGYRFRPTEEVLIVNYLYPRALHMPLPC-EIIADINILQHHPSDIV-PEEESQTGKHFFTRKTIKYPGGHRSNRVVGNGSWRATGSEVPIYC 109
                      79****************************.89**************5.234566799************************************ PP

              NAM  95 k.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      k     ++ lvg+++tLvfy+g+++ +e   W mhe+rl
  LPERR11G09550.1 110 KlgngaNNMLVGMRRTLVFYNGKSQATECMVWAMHEFRL 148
                      9998877778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.88E-3710150IPR003441NAC domain
PROSITE profilePS5100535.04418217IPR003441NAC domain
PfamPF023657.1E-1719148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MASTGISIPM VNGAAMHLPP GYRFRPTEEV LIVNYLYPRA LHMPLPCEII ADINILQHHP  60
SDIVPEEESQ TGKHFFTRKT IKYPGGHRSN RVVGNGSWRA TGSEVPIYCK LGNGANNMLV  120
GMRRTLVFYN GKSQATECMV WAMHEFRLAG VGLLPRPMMR QTTGDGLELP NGYRHATITK  180
RNNGLSATNQ GKIACARHVT IMVEPDSSWL ICHVYKKRQR APRVVFPRAI DNAIEGQVRF  240
VDFLGHPSLE PSSPHSCIID TISTDDMSDE SVGGNGEKDG DSLYE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-251414811140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G09550.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015615934.11e-117NAC transcription factor 25
TrEMBLA0A0D9XRL70.0A0A0D9XRL7_9ORYZ; Uncharacterized protein
STRINGLPERR11G09550.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44822369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.12e-31NAC domain containing protein 83