PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G03280.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family TALE
Protein Properties Length: 657aa    MW: 68413.6 Da    PI: 6.3177
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G03280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.91.9e-093654021954
                      HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
         Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      Fe   ++yp+ +++  LAk++gLt +qV++WF N R +
  LPERR11G03280.1 365 FEHflHPYPKDSDKIMLAKQTGLTRSQVSNWFINARVR 402
                      664459******************************88 PP
2BELL120.66.7e-39225296172
             BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                      erqelq+kk kL+++l+eV++rY+qy++q+q+v+ssFeavag gsa+ Yt+lAl++iSr+FrcL+daiaeq+
  LPERR11G03280.1 225 ERQELQMKKGKLINMLDEVEQRYRQYHQQMQVVVSSFEAVAGGGSARTYTALALRTISRQFRCLRDAIAEQV 296
                      79********************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.0E-61152294IPR006563POX domain
PfamPF075262.2E-50157293IPR006563POX domain
PROSITE profilePS5007112.228343406IPR001356Homeobox domain
SMARTSM003891.2E-9346410IPR001356Homeobox domain
CDDcd000863.54E-13346407No hitNo description
SuperFamilySSF466893.38E-17347412IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.6E-29349412IPR009057Homeodomain-like
PfamPF059202.5E-18363402IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009610Biological Processresponse to symbiotic fungus
GO:0009737Biological Processresponse to abscisic acid
GO:0010197Biological Processpolar nucleus fusion
GO:0010201Biological Processresponse to continuous far red light stimulus by the high-irradiance response system
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MAAYYHGGAG TDIQSGTDGL QTLYLMNPSY AAGYSDAAAP TANMMLLNSA VTSMTPVSAF  60
AHHHNQSPPP SSSSAAAAQH FVGIPLQAPP ASGYNLWTTT ATAGDMSSPT TPPPQHGGGG  120
VSAVLSLSSR EAAAPVTVAA AAGDDVVKYH HQQQGQMVMS SKYLKAAQEL LDEVVSVSKG  180
VEAAAKSPAA SVKKKEESEG VSGGGGTEDG GGAPAPPPPE MSTAERQELQ MKKGKLINML  240
DEVEQRYRQY HQQMQVVVSS FEAVAGGGSA RTYTALALRT ISRQFRCLRD AIAEQVRAAS  300
RQLGEADADG AIGGGRSVGS RLRYIDHQLR QQRALQQLGM MQSSAWRPQR GLPERSVSIL  360
RAWLFEHFLH PYPKDSDKIM LAKQTGLTRS QVSNWFINAR VRLWKPMVEE MYLEETKDQD  420
AAAATAAGDE GKPGVNGVAV DNKAARAMAA TADQAAGGVH PSLLELAGDH QSNATFYDDD  480
GGDEDDAAAA MKKARTEESH QPPAFHVSDH VATLHAAAAA AAAARQQHDE VSHRELLMKF  540
MESGSAATAS REEHGGAGGY SLFSPAAYGH HQFGSEQFAF AGHGHGGGGG VSLTLGLPHG  600
AEQTPATFLM SSSNGGDGGA GAGAGAGGGY DMNMQSTKSF AAQLXPAPAP APAVDTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A4e-17352409158Homeobox protein Meis1
4xrs_B4e-17352409158Homeobox protein Meis1
5bng_A4e-17352410159Homeobox protein Meis2
5bng_B4e-17352410159Homeobox protein Meis2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G03280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3546391e-170AK354639.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1009H02.
GenBankAK3550781e-170AK355078.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1015J22.
GenBankAK3665361e-170AK366536.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2043O18.
GenBankAK3743451e-170AK374345.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3061L07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025827941.10.0BEL1-like homeodomain protein 1
RefseqXP_025827942.10.0BEL1-like homeodomain protein 1
RefseqXP_025827943.10.0BEL1-like homeodomain protein 1
RefseqXP_025827944.10.0BEL1-like homeodomain protein 1
SwissprotQ9SJ561e-108BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBLA0A0D9XPA40.0A0A0D9XPA4_9ORYZ; Uncharacterized protein
STRINGLPERR11G03280.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP48163758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35940.34e-86BEL1-like homeodomain 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]