PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR11G00140.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family WRKY
Protein Properties Length: 498aa    MW: 55293.4 Da    PI: 8.3581
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR11G00140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.61.7e-30374430360
                      -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      DgynWrKYGqK+vk s+fprsYY+Ct++ Cpvk+kve++  d+++ ei+Y+geHnh+k
  LPERR11G00140.1 374 DGYNWRKYGQKQVKRSKFPRSYYKCTYPACPVKRKVETTL-DGQIAEIVYNGEHNHPK 430
                      9***************************************.***************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5060012.4271176IPR003653Ulp1 protease family, C-terminal catalytic domain
SuperFamilySSF540012.35E-3425216No hitNo description
Gene3DG3DSA:3.30.310.1306.3E-678170No hitNo description
PfamPF029021.5E-484180IPR003653Ulp1 protease family, C-terminal catalytic domain
Gene3DG3DSA:2.20.25.801.2E-26367431IPR003657WRKY domain
PROSITE profilePS5081122.022367431IPR003657WRKY domain
SuperFamilySSF1182904.97E-24368431IPR003657WRKY domain
SMARTSM007749.4E-33372430IPR003657WRKY domain
PfamPF031061.5E-23374429IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006508Biological Processproteolysis
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008234Molecular Functioncysteine-type peptidase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 498 aa     Download sequence    Send to blast
MRPRRRGGGD EEEEEERVLS HGDVGPHFLN DRIIAFYLAH LQSQFHGDGD DLLLLPPSIP  60
YLLANLPDPA SVAEPLRLPS RRLVLLPVND NPDVSHAEGG THWTLLLLDN TNPVSGPRFV  120
HHDSLPPTNL PSARRLAAVL RPLLPNRTIP LVEGPTPRQT NGYDCGVFVL AVARAICHWW  180
TTASHQLEPD WFEAVKREVN ADSVKAMRTQ LLHLIDTLIQ ANNNTTNNQH TSTQLPCSPS  240
IASTSLCMSQ HTRLWCHMQS HKKVAAVKPV ASRPSSRLRT FSMLPEDSTA TDSPWVTSQE  300
EAIILRRPKA TRFTPPMSNS STDVAATRFE DSGTHRTYDK KKADEGQVAC RDNLTGPQSV  360
RKPIISVKNS LSYDGYNWRK YGQKQVKRSK FPRSYYKCTY PACPVKRKVE TTLDGQIAEI  420
VYNGEHNHPK PHPAKKSTLS SIVETVDATN DGGLETRLEG CDQAIGSDAV VEAFKGGFNC  480
LDGFGNGNEI SDCKKRTK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1xt9_A2e-231617810176Sentrin-specific protease 8
2bkq_A2e-231617810176SENTRIN-SPECIFIC PROTEASE 8
2bkq_B2e-231617810176SENTRIN-SPECIFIC PROTEASE 8
2bkq_C2e-231617810176SENTRIN-SPECIFIC PROTEASE 8
2bkq_D2e-231617810176SENTRIN-SPECIFIC PROTEASE 8
2bkr_A2e-231617810176SENTRIN-SPECIFIC PROTEASE 8
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR11G00140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015698188.10.0PREDICTED: uncharacterized protein LOC102718700
TrEMBLA0A0D9XN300.0A0A0D9XN30_9ORYZ; Uncharacterized protein
STRINGLPERR11G00140.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23252941
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37260.19e-31WRKY family protein