PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR11G00110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | WOX | ||||||||
Protein Properties | Length: 199aa MW: 21746.5 Da PI: 8.7587 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 66 | 5e-21 | 6 | 66 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++R+++t+eql +Lee++++ r+p+a+e+++++++l +++ ++V++WFqN++a+e++ LPERR11G00110.1 6 STRWCPTPEQLMILEEMYRSgVRTPNAAEIQQITAHLayygRIEGKNVFYWFQNHKARERQ 66 58*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 121.7 | 2.9e-39 | 5 | 67 | 2 | 64 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 ++tRW+PtpeQ++iLee+y+sG+rtPn++eiq+ita+L+ yG+ie+kNVfyWFQN+kaRerq+ LPERR11G00110.1 5 PSTRWCPTPEQLMILEEMYRSGVRTPNAAEIQQITAHLAYYGRIEGKNVFYWFQNHKARERQR 67 689***********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.463 | 2 | 67 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.8E-6 | 4 | 71 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.99E-12 | 4 | 73 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 9.31E-5 | 5 | 62 | No hit | No description |
Pfam | PF00046 | 1.1E-18 | 6 | 66 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-8 | 8 | 66 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MPQTPSTRWC PTPEQLMILE EMYRSGVRTP NAAEIQQITA HLAYYGRIEG KNVFYWFQNH 60 KARERQRLRR RQLCARHQQQ PSPAGAAAPA APPAVMQLHH HHPYAAAGAT ANNIIMPPHL 120 QQQQQHPAAA GGEWAHYCSI ASASGASTAA DHHETMAAVP PCCRPLKTLE LFPTKSTAGG 180 LKEDCCSSSK SSSCSTSTN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. | |||||
UniProt | Transcription factor which may be involved in developmental processes. Seems to act as repressor of YAB5. {ECO:0000269|PubMed:17351053}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR11G00110.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB218893 | 1e-81 | AB218893.1 Oryza sativa Japonica Group mRNA for OsWOX3 protein, complete cds. | |||
GenBank | AM490243 | 1e-81 | AM490243.1 Oryza sativa mRNA for putative narrow sheath protein (ns gene). | |||
GenBank | AP014967 | 1e-81 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. | |||
GenBank | AP014968 | 1e-81 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. | |||
GenBank | BX000496 | 1e-81 | BX000496.1 Oryza sativa chromosome 12, . BAC OSJNBa0096E03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | BX000503 | 1e-81 | BX000503.2 Oryza sativa chromosome 12, . BAC OSJNBb0077A02 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | BX072548 | 1e-81 | BX072548.4 Oryza sativa chromosome 11, . BAC OSJNBa0029D01 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020274850.1 | 2e-59 | WUSCHEL-related homeobox 3A | ||||
Swissprot | A2ZH47 | 4e-53 | WOX3_ORYSI; WUSCHEL-related homeobox 3 | ||||
Swissprot | Q33DK1 | 4e-53 | WOX3_ORYSJ; WUSCHEL-related homeobox 3 | ||||
TrEMBL | A0A0D9XVZ2 | 1e-145 | A0A0D9XVZ2_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR11G00110.1 | 1e-146 | (Leersia perrieri) | ||||
STRING | LPERR12G00390.1 | 1e-146 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2177 | 38 | 97 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 5e-35 | WOX family protein |
Publications ? help Back to Top | |||
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