PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR10G11580.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

YABBY

Protein Properties

Length: 292aa MW: 31348.8 Da PI: 9.0289

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR10G11580.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	206.8	8.1e-64	56	253	5	170
YABBY 5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.......................lleel 75 + eq+Cyv+C +C+t+l+vsvPs+sl+k+vtvrCGhC+sll+vn++ +++ ++ ++ LPERR10G11580.1 56 EEQEQLCYVHCHYCDTVLVVSVPSSSLYKTVTVRCGHCSSLLTVNMMRGLLFPTTTLPTTTTAAPPpppahlfphssllldemsstnnqR---- 145 6789***************************************987764433333334444444688899999999655544444431.... PP YABBY 76 kveeenlksnvekeesastsvssekl..................senedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishr 150 + +++++ ++s + +e +pr+ ++rPPekrqrvPsaynrfik+eiqrika+nPdishr LPERR10G11580.1 146 ------QQLLQMEQHGIGGMMASAAAarcrnnaaaqpppaaatqGKGAKEPSPRTNTvINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHR 233 ......222222222221111111112223444456777777666667788999888689****************************** PP YABBY 151 eafsaaaknWahfPkihfgl 170 eafsaaaknWahfP+ihfgl LPERR10G11580.1 234 EAFSAAAKNWAHFPHIHFGL 253 ****************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.8E-65	57	253	IPR006780	YABBY protein
SuperFamily	SSF47095	3.67E-8	191	246	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	3.4E-4	202	245	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MPSSSSSSAA SAASSFLPVQ KQEQQMVVAV DNLPPPATAA MQQQQLVSPA TAAAEEEQEQ 60 LCYVHCHYCD TVLVVSVPSS SLYKTVTVRC GHCSSLLTVN MMRGLLFPTT TLPTTTTAAP 120 PPPPAHLFPH SSLLLDEMSS TNNQRQQLLQ MEQHGIGGMM ASAAAARCRN NAAAQPPPAA 180 ATQGKGAKEP SPRTNTVINR PPEKRQRVPS AYNRFIKDEI QRIKAGNPDI SHREAFSAAA 240 KNWAHFPHIH FGLMPDHQGL LKKTSLLPQR KDGLLKDGLY AAAAANMGVA PY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR10G11580.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB274015	1e-103	AB274015.1 Oryza sativa Japonica Group OsYABBY3 mRNA for OsYABBY3 protein, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004982656.1	1e-109	protein YABBY 3
Swissprot	Q8L556	1e-103	YAB3_ORYSJ; Protein YABBY 3
TrEMBL	A0A0D9XLC3	0.0	A0A0D9XLC3_9ORYZ; Uncharacterized protein
STRING	LPERR10G11580.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1445	38	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	1e-46	YABBY family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]