PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR10G09980.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family HD-ZIP
Protein Properties Length: 848aa    MW: 93051.4 Da    PI: 5.5942
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR10G09980.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61.1e-183087457
                     -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       ++t+eq+e+Le++++++++ps ++r++L +++    +++ +q+kvWFqNrR ++k+
  LPERR10G09980.1 30 YVRYTPEQVEALERVYAECPKPSSSRRQQLLRECpilsNIEPKQIKVWFQNRRCRDKQ 87
                     6789***************************************************996 PP
2START159.62.3e-501663732204
                      HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEE CS
            START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galql 93 
                      +aee+++e+++ka+ ++  Wv ++ +++g+++  +++ s++++g a+ra+g+v  ++++ ve+l d++  W +++++ e+      g  g+++l
  LPERR10G09980.1 166 IAEETLTEFLSKATGTAVDWVPMPGMKPGPDSFGIVAVSHGCKGVAARACGLVNLEPTKIVEILKDRP-SWFRDCRSLEVFTMFPAGngGTIEL 258
                      7899******************************************************9999999999.***********999999999***** PP

                      EEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHH CS
            START  94 mvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrs 183
                       +++++a+++lvp Rdf+++Ry+ ++++g++v++++S++     p+    +++vRae+lpSg+l++p+++g+s v++v+h dl++++++++lr+
  LPERR10G09980.1 259 VYMQMYAPTTLVPaRDFWTLRYTTTMEDGSLVVCERSLSGSGGGPStasAQQFVRAEMLPSGYLVRPCEGGGSIVHIVDHLDLEAWSVPEVLRP 352
                      ***************************************9999998888899****************************************** PP

                      HHHHHHHHHHHHHHHHTXXXX CS
            START 184 lvksglaegaktwvatlqrqc 204
                      l++s+++ ++k+++a+l++ +
  LPERR10G09980.1 353 LYESSRVVAQKMTTAALRHIR 373
                      *****************9865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.5322488IPR001356Homeobox domain
SMARTSM003893.0E-162692IPR001356Homeobox domain
CDDcd000866.90E-172989No hitNo description
SuperFamilySSF466891.63E-162992IPR009057Homeodomain-like
PfamPF000462.5E-163087IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-183184IPR009057Homeodomain-like
CDDcd146861.85E-681120No hitNo description
Gene3DG3DSA:1.20.5.1704.5E-485135No hitNo description
PROSITE profilePS5084827.421156384IPR002913START domain
CDDcd088751.03E-72160376No hitNo description
SMARTSM002347.9E-37165375IPR002913START domain
Gene3DG3DSA:3.30.530.208.7E-22165351IPR023393START-like domain
SuperFamilySSF559619.2E-37166377No hitNo description
PfamPF018524.4E-48166373IPR002913START domain
PfamPF086702.2E-48705847IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 848 aa     Download sequence    Send to blast
MAAAVAAMRS GSGSDGGGGY DKAGMDAGKY VRYTPEQVEA LERVYAECPK PSSSRRQQLL  60
RECPILSNIE PKQIKVWFQN RRCRDKQRKE ASRLQAVNRK LTAMNKLLME ENERLQKQVS  120
QLVHENAYMK QQLQNPSLAN DTSCESNVTT PNPLRDASNP SGLLTIAEET LTEFLSKATG  180
TAVDWVPMPG MKPGPDSFGI VAVSHGCKGV AARACGLVNL EPTKIVEILK DRPSWFRDCR  240
SLEVFTMFPA GNGGTIELVY MQMYAPTTLV PARDFWTLRY TTTMEDGSLV VCERSLSGSG  300
GGPSTASAQQ FVRAEMLPSG YLVRPCEGGG SIVHIVDHLD LEAWSVPEVL RPLYESSRVV  360
AQKMTTAALR HIRQIAQETS GEVVYALGRQ PAVLRTFSQR LSSANMLLCP FRGFNDAISG  420
FNDDGWSVMG GDGIEDVIIA CNAKKVRNTS TAANAFVTPG GVICAKASML LQSVPPAVLV  480
RFLREHRSEW ADYNFDAYSA SSLKTSSCSL PGLRPMRFSG SQIIMPLAHT VENEEILEVV  540
RLEGQALTQD DGLLSRDIHL LQLCTGIDEK SMGSCFQLVF APIDELFPDD APLISSGFRV  600
IPLDVKTDGT PTGRTLDLAS SLEVGSTAQP TGDASLDDCN LRSVLTIAFQ FPYEMHLQDS  660
VATMARQYIR SIVSSVQRVS MAISPSRSGL NAGQKIISGF PEAPTLARWI CQSYQFHLGM  720
ELLQHADDAG ESLLKMLWDY EDAILCCSFK EKPVFTFANE MGLNMLETSL VALQDLSLDK  780
MFDDAGRKAL YNEIPKLMEQ GFVYLPGGVC LSGMGRHVSF ERAVAWKVLG EDNNVHCLAF  840
CFVNWSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR10G09980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1028300.0AK102830.1 Oryza sativa Japonica Group cDNA clone:J033109G06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015614901.10.0homeobox-leucine zipper protein HOX9
SwissprotA2Z8L40.0HOX9_ORYSI; Homeobox-leucine zipper protein HOX9
TrEMBLA0A0D9XKQ40.0A0A0D9XKQ4_9ORYZ; Uncharacterized protein
STRINGLPERR10G09980.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37438197
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein