PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G15280.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Trihelix
Protein Properties Length: 348aa    MW: 37730.6 Da    PI: 6.8062
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G15280.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix35.82.1e-1124129186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.................rergferspkqCkekwenlnkrykkikegekkr...tse 74 
                      +W+++ +  L+ea++ ++   +r+klk  +W ++++ +                       ++p+qCk+k+e+++kry+++ + + +    +++
  LPERR09G15280.1  24 EWSESGIVRLLEAYEAKWLLRNRAKLKWSDWVDIAQEVsahcamenaaasaagakPGSNAAKTPNQCKNKIESMKKRYRAEFAAAARAgpaAAG 117
                      5*******************************9999999999**********9776677799*****************987666655222466 PP

         trihelix  75 ssstcpyfdqle 86 
                         ++++f++++
  LPERR09G15280.1 118 GGPSWRFFSRMD 129
                      677899999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.0E-1322130No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MDHVLPDADA PPLAAAAPPQ KRDEWSESGI VRLLEAYEAK WLLRNRAKLK WSDWVDIAQE  60
VSAHCAMENA AASAAGAKPG SNAAKTPNQC KNKIESMKKR YRAEFAAAAR AGPAAAGGGP  120
SWRFFSRMDG LLKGPAGSGS GSGQPAQPEF SNSIDLRAAP PPPAKLEVDV DADFVNQLAD  180
AGPGALSDLV NAYANGSIQE KFEKVENSGQ LEGRAAESDV NVNSPRIKEA NDDAEEVDKV  240
WDMSKKRKKS TEFDIAKSIE LLASSFLKIE RARMDLYRET ERMRVESEIK KGEMELKRTE  300
IMAKTHLQIA KLFAKRLKEC SSKTGGSSSV TAEVDNLAKK GENVTVDI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1244248KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G15280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126170.0CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660969.10.0PREDICTED: trihelix transcription factor ASIL1-like
TrEMBLA0A0D9XGN80.0A0A0D9XGN8_9ORYZ; Uncharacterized protein
STRINGLPERR09G15280.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP73333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54390.18e-44sequence-specific DNA binding transcription factors