PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR09G12890.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | TCP | ||||||||
Protein Properties | Length: 370aa MW: 38188.8 Da PI: 6.1866 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 106.4 | 4.6e-33 | 102 | 197 | 5 | 89 |
TCP 5 kdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssg... 88 r+ ++h kv+gR+RR+R++++caar+ +L++eLG+++d++ti WL+qq++pai+++tgt++ +a ++ ++++s++ LPERR09G12890.1 102 PPRNRDRHIKVEGRGRRIRMPVKCAARVAQLTRELGHKSDGETIRWLMQQSEPAIIAATGTGTVPAIATtvdgvlrL------PTQSPSAAgga 189 5799*********************************************************8888854442222221......22222222222 PP TCP 89 .......k 89 LPERR09G12890.1 190 qsghvveP 197 22234432 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 25.035 | 105 | 159 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.8E-26 | 105 | 184 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MDSQLQDKAA DEEAAVGNAA ALAGLGGYPS NQSPFMEPPL PEKADEEEMA ATAGDAADFG 60 RMGFAPIRSP PPPSAAELVP KAEPVAAAAM ELLQGMAVAK PPPRNRDRHI KVEGRGRRIR 120 MPVKCAARVA QLTRELGHKS DGETIRWLMQ QSEPAIIAAT GTGTVPAIAT TVDGVLRLPT 180 QSPSAAGGAQ SGHVVEPPAP KRRRKLQPTR AGAAPLALAP PTHAAAVYYP VVADPLLQAN 240 GGGVISISSG LAPISSTAAA VPFMAMPPGH SNGKQVMSPA TVWMVPPGAG AGAAAISQPM 300 HYWAFQTNHH DPAANFAGGS NFQHQTFHNA VAGGGEESQS QHHGGHKVNA DEPAGEENEY 360 EGMTDSSSDE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 199 | 205 | PKRRRKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}. | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR09G12890.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612634.1 | 3e-99 | transcription factor PCF2-like | ||||
Swissprot | A2YXQ1 | 5e-75 | PCF2_ORYSI; Transcription factor PCF2 | ||||
Swissprot | Q6ZBH6 | 5e-75 | PCF2_ORYSJ; Transcription factor PCF2 | ||||
TrEMBL | A0A0D9XFT0 | 0.0 | A0A0D9XFT0_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR09G12890.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3912 | 31 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 7e-39 | TCP family protein |
Publications ? help Back to Top | |||
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