PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G12780.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family bHLH
Protein Properties Length: 269aa    MW: 28572.3 Da    PI: 6.1658
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G12780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.73.6e-12124169454
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      +h e+Er+RR+++N +f  Lr  +P+       +++Ka+ L  A  YI++L
  LPERR09G12780.1 124 SHVEAERQRREKLNRRFCDLRAAVPTV-----SRMDKASLLADAAVYISEL 169
                      89************************6.....49***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.33E-15118187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.837120169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-9123169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.07E-12123174No hitNo description
Gene3DG3DSA:4.10.280.103.7E-15124186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-10126175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MDEMLSPCSS FSPASPSSMF SSGVTAAGHV LEFTSCDVPD EWLMGDVDDH VVVVAKNEED  60
DVIAGDAGLW PPVIGSSLST ESDMSELLMP RSFVEATAPA APSNRPAKRR GRKPGPRPDG  120
PTVSHVEAER QRREKLNRRF CDLRAAVPTV SRMDKASLLA DAAVYISELR ARVARLESDA  180
AAANRHATAA RWEPTSGNTS SALGMIDEAV EVRMMGRDAA AVRVTTAAAG RHAPARLMCA  240
LRALELPVQH ACVMRLHGGG GGATTVQEC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-18123179763Transcription factor MYC2
5gnj_B1e-18123179763Transcription factor MYC2
5gnj_E1e-18123179763Transcription factor MYC2
5gnj_F1e-18123179763Transcription factor MYC2
5gnj_G1e-18123179763Transcription factor MYC2
5gnj_I1e-18123179763Transcription factor MYC2
5gnj_M1e-18123179763Transcription factor MYC2
5gnj_N1e-18123179763Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G12780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0065251e-82AP006525.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0498F03.
GenBankAP0072541e-82AP007254.2 Oryza sativa Japonica Group genomic DNA, chromosome 9, fosmid clone:OSJNOa211K08.
GenBankAP0149651e-82AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence.
GenBankCP0126171e-82CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025876009.11e-102transcription factor MYC2
TrEMBLA0A0D9XFR30.0A0A0D9XFR3_9ORYZ; Uncharacterized protein
STRINGLPERR09G12780.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP89333130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.14e-23bHLH family protein