PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR09G10110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | Dof | ||||||||
Protein Properties | Length: 198aa MW: 21140.4 Da PI: 9.2434 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 119.2 | 1.5e-37 | 37 | 94 | 5 | 62 |
zf-Dof 5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 a +cprC+s++tkfCyynny++sqPr+fCk+CrryWtkGG+lrnvPvGg++r+n +++ LPERR09G10110.1 37 AEACPRCESRETKFCYYNNYNTSQPRHFCKSCRRYWTKGGSLRNVPVGGASRHNTTTK 94 679**************************************************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50884 | 27.82 | 38 | 92 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 7.6E-32 | 38 | 91 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 40 | 76 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 2.0E-17 | 48 | 88 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MQEAAGRRAA PQFAGVDLRR PKGYPPTQAT PAIEAAAEAC PRCESRETKF CYYNNYNTSQ 60 PRHFCKSCRR YWTKGGSLRN VPVGGASRHN TTTKQSSSSS SSVSSPKRSK NNPKRRRVAV 120 SPEPTTPAPP TTAADVAAPT SQEDSATVAG LADGGGKEVV VDASPFEWPS GCDLGPYTYW 180 PTGGVFADTD PALFLNLP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 117 | KRRRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence at the MNF1-binding site. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00672 | SELEX | Transfer from GRMZM2G009406 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR09G10110.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP005759 | 1e-62 | AP005759.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, PAC clone:P0556A05. | |||
GenBank | AP014965 | 1e-62 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012617 | 1e-62 | CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence. | |||
GenBank | KC996733 | 1e-62 | KC996733.1 Oryza sativa transcription factor Dof25 (Dof25) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003576643.1 | 4e-66 | dof zinc finger protein MNB1A | ||||
Swissprot | P38564 | 7e-47 | MNB1A_MAIZE; Dof zinc finger protein MNB1A | ||||
TrEMBL | A0A0D9XET8 | 1e-142 | A0A0D9XET8_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR09G10110.1 | 1e-143 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G21270.1 | 1e-24 | DOF zinc finger protein 2 |
Publications ? help Back to Top | |||
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