PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR09G10020.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | bZIP | ||||||||
Protein Properties | Length: 176aa MW: 20095.7 Da PI: 8.5207 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 39.6 | 1.2e-12 | 81 | 135 | 3 | 57 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 e +r rr+++NRe+ArrsR RK+ ++ eL+ v L N++L +el++ ++ LPERR09G10020.1 81 EERRRRRMISNRESARRSRMRKQRQLSELRGQVVHLRDANRRLLDELNQAMRGCS 135 67899******************************************99877766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.5E-14 | 79 | 143 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 4.6E-10 | 80 | 135 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.553 | 81 | 132 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 2.1E-10 | 83 | 132 | No hit | No description |
SuperFamily | SSF57959 | 6.13E-11 | 83 | 132 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 86 | 101 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 2.12E-14 | 88 | 132 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 176 aa Download sequence Send to blast |
MLHHHYHGEV ASLHCLSPPS LPFSSHYHSN MITMTPTPFH FPAAAVICEP IHELLPVVAA 60 AGNCPAGSGS TDDAYQMAAE EERRRRRMIS NRESARRSRM RKQRQLSELR GQVVHLRDAN 120 RRLLDELNQA MRGCSDIHCE NARFRKERDE LQAKLEHLMQ AQKNNTSPSS PEPREN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 95 | 102 | RRSRMRKQ |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR09G10020.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK108319 | 1e-170 | AK108319.1 Oryza sativa Japonica Group cDNA clone:002-141-G12, full insert sequence. | |||
GenBank | AP006169 | 1e-170 | AP006169.3 Oryza sativa Japonica Group genomic DNA, chromosome 9, BAC clone:OSJNBa0026C08. | |||
GenBank | AP014965 | 1e-170 | AP014965.1 Oryza sativa Japonica Group DNA, chromosome 9, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015612405.1 | 1e-104 | basic leucine zipper 8 | ||||
TrEMBL | A0A0D9XES3 | 1e-127 | A0A0D9XES3_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR09G10020.1 | 1e-128 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1186 | 35 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G38800.1 | 3e-09 | basic leucine-zipper 43 |