PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR09G09620.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

ZF-HD

Protein Properties

Length: 286aa MW: 30261.7 Da PI: 7.5338

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR09G09620.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	100	1.7e-31	69	123	4	59
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 rY+eClkNhA+ +GghavDGCgEfm++ ge+gt++al+CaAC+CHRnFHR+e+e+ LPERR09G09620.1 69 GRYRECLKNHAIGIGGHAVDGCGEFMAA-GEDGTIDALRCAACNCHRNFHRKESES 123 58***********************9.999******************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	7.0E-31	43	123	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	1.1E-28	70	121	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.5E-29	70	120	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	27.418	71	120	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF46689	3.75E-20	212	284	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.3E-32	216	285	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01565	4.6E-26	223	279	IPR006455	Homeodomain, ZF-HD class

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 286 aa Download sequence Send to blast
MDFDDHDHDH DDGDDVMQPM PVSSSYETPP QHGGLGVGGG VMAPKPPGEI SNRVNKGPSC 60 VGAGAGAGGR YRECLKNHAI GIGGHAVDGC GEFMAAGEDG TIDALRCAAC NCHRNFHRKE 120 SESSLAAAVV PYGAATPHNQ FSPYYRTPAS YLHHHNQHHH MAAAAAAAAA AGGHPQRPLA 180 LPSTSHSGRD DGDDLSGMVG PMSAIGPLSG MSLGGAGPSS SGKKRFRTKF SQEQKDKMLA 240 FAERVGWRIQ KHDEAAVQQF CDEVGVKRHV LKVWMHNNKH TLGKKP

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wh7_A	1e-28	224	281	18	75	ZF-HD homeobox family protein
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR09G09620.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012617	1e-167	CP012617.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 9 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015610854.1	1e-146	zinc-finger homeodomain protein 1
Swissprot	Q6YXH5	1e-147	ZHD1_ORYSJ; Zinc-finger homeodomain protein 1
TrEMBL	A0A0D9XEM3	0.0	A0A0D9XEM3_9ORYZ; Uncharacterized protein
STRING	LPERR09G09620.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3950	32	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24660.1	8e-63	homeobox protein 22

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]