PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR09G06370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | G2-like | ||||||||
Protein Properties | Length: 387aa MW: 40107.5 Da PI: 9.1949 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.1 | 3.5e-32 | 198 | 251 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ LPERR09G06370.1 198 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 251 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.97E-15 | 195 | 252 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-28 | 196 | 252 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 9.2E-24 | 198 | 251 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.7E-7 | 199 | 250 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MAAAGWVDGV DRALSLAAAG AAAGGGRSWR WSRRVPAAMA APPIRGIPIY NGPGGFPFLP 60 PSAGGLGVDA VAGHHHQKLG FYNSYHHHHP ATWPSSLGST SPSPLLAPPP PTAGDAFLST 120 TPSAAAAAAA HHHHHRMLSA SGRLNGMLSV SDTLRSYTTS AGGLAGGLHH HLHGGAPPFG 180 LASRFMPKLP AKRSMRAPRM RWTSTLHARF VHAVELLGGH ERATPKSVLE LMDVKDLTLA 240 HVKSHLQMYR TVKSTDKPAA SSGPADGGSG DEDFTGGGQA ASGGGDSMCL RGAAPFAEHG 300 RSASEGAASS VGGGDMDQSS AGNTSTTRWS NSSRDPWLSS NSCNMDAHRS NLEPCRSSSS 360 QVSNHELSSP SLEFTLGRPD WHGADHD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 3e-16 | 199 | 253 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 3e-16 | 199 | 253 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 3e-16 | 199 | 253 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 3e-16 | 199 | 253 | 3 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that regulates abaxial identity during leaf development. {ECO:0000269|PubMed:18594992}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR09G06370.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ268748 | 1e-136 | FJ268748.1 Oryza sativa Japonica Group rolled leaf 9 (RL9) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025804688.1 | 1e-159 | probable transcription factor RL9 | ||||
Swissprot | Q0J235 | 1e-147 | ROLL9_ORYSJ; Probable transcription factor RL9 | ||||
TrEMBL | A0A0D9XDF5 | 0.0 | A0A0D9XDF5_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR09G06370.1 | 0.0 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2558 | 37 | 87 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16560.1 | 8e-45 | G2-like family protein |