PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR09G05180.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family Trihelix
Protein Properties Length: 1287aa    MW: 146248 Da    PI: 6.0382
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR09G05180.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.82.1e-211588174
         trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74
                     +W+++e +aL+++r +m++++r  + k plWee+s++++  g++rs+k+Ck+++e++ k yk++k++  +r+++
  LPERR09G05180.1 15 QWSREELMALLKIRLDMDDEFRWICVKDPLWEEISRALAWLGYKRSAKTCKKRFEDVVKFYKRTKDHHTSRQQQ 88
                     7********************************************************************99665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.3E-131487No hitNo description
CDDcd122036.31E-181479No hitNo description
PROSITE profilePS500907.1081672IPR017877Myb-like domain
SuperFamilySSF525401.35E-36501762IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3004.3E-7545681IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009312.0E-34545760IPR002182NB-ARC
PRINTSPR003644.4E-11550565No hitNo description
PRINTSPR003644.4E-11625639No hitNo description
PRINTSPR003644.4E-11725739No hitNo description
SuperFamilySSF520581.58E-36787985IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.108.8E-19809988IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.2E-1610781279IPR032675Leucine-rich repeat domain, L domain-like
SuperFamilySSF520581.58E-3610801278IPR032675Leucine-rich repeat domain, L domain-like
PRINTSPR003644.4E-1112131229No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043531Molecular FunctionADP binding
Sequence ? help Back to Top
Protein Sequence    Length: 1287 aa     Download sequence    Send to blast
MLGKTNTRYG ELSKQWSREE LMALLKIRLD MDDEFRWICV KDPLWEEISR ALAWLGYKRS  60
AKTCKKRFED VVKFYKRTKD HHTSRQQQGV PVRSPVLLSS LSMASTSKLE IPQSQPMSLD  120
NVSSSSFPKL ESKVESDKIS EEDTMITDEF HIGKSNPRGD DSKELMGFFE GFMKQVLERQ  180
EEKQQLFLEG LEKREAERMA REEAWRRQEM IRLSREHQQL TQERAAIISF LHRIGQTPSG  240
VIPPTTQTFP WLQQPVPAVP SPKPENMETM QHDEASVNLH PSNSLTDEPP LNCAIPGTVE  300
SSTTQHPTAC SVHIHRQYTP NSMQNSNMQQ IHDSPSFASW MPDEFTADSL QNSTVQKIHD  360
PRTLQYSASF ASWMPDENSP SLNSCRQDEW FALETTIHDM YDLIELAECW LHKDAIANLL  420
QEAKDTVCCT EDFLDKLSYY KLQEKAGFNA NKSSCPEFSD IEMTEIHGNL SHLREQMGNL  480
GLHDMQPQHF IFESFSQKQH RFTYKETIIG RQEELQVLMD SLILDKNSPT GGQVTEVPDS  540
GRATQKNLSV LTIIGDGGIG KTALAHTSFH HQRVQDHFDL LVWISVSDGF DDKKLIKRLA  600
CSVAESEMNS DDLSCLQKVL TNGLIHHSMR LLLVLDDLQE DVCQEYYRGW ERFLVPLKCA  660
RQGSTILVTT RSMKVAEHIS TARLQLADLP EEISWHFFSM HAFDSPISDS DQAVECIGRT  720
IAARLNGSPL GSKIIGCLLN LKVDAAYWKS ILENIGLEYI DQLVRRSFFQ IFPTSSGSRY  780
VYVMQGLLYE TAQEISINEC FLIKDSSDLL RIPPKVRHLS ILHFSGLSSS DLESLHKYKT  840
LRSVVCISID SNVLTTCVLE TWFSHLTNIR MLRFISCQLA ELPGNVCDLI LLRYLDISSC  900
KFEALPDSIW CLHKLEILDA QQCGFHGVPK DIVKLVNLRK LRLKDDLINQ LGHVPGIEKL  960
VYLQEMPYYA VGDTPGRGIQ ELKNLNDLRG ALEVSRLHNV TSKEQAAKAN LDKKIHLNTL  1020
VLSWHESTRP GKVNADQEME VLEGLCPSPS MKNLEVRFYM GFGFHPSWLL NGKNDEPTSS  1080
RLESLSINSC PNITRLFITG AASTSTSSRG SSLEFKSLTK LCITWCRKLR NLDNLLEPEI  1140
LPEIRMIQIS NCEELESLPA NRFSEFTHLE DLEVSHCWSL SWARGFTLPS SLKSLKLEAC  1200
GELVDYKLSC CLRELPALAT LELQFCSGME SIDAKVWSGM PSLRSLKIFC CQELSSFGGA  1260
ESISKVEKVD IRYCPKLTEL EQPFQRG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C1e-14542755176386Disease resistance RPP13-like protein 4
6j5t_F1e-14542755176386Disease resistance RPP13-like protein 4
6j5t_G1e-14542755176386Disease resistance RPP13-like protein 4
6j5t_L1e-14542755176386Disease resistance RPP13-like protein 4
6j5t_O1e-14542755176386Disease resistance RPP13-like protein 4
6j5u_A1e-14542755176386Disease resistance RPP13-like protein 4
6j5v_A1e-14542755176386Disease resistance RPP13-like protein 4
6j5w_A1e-14542755176386Disease resistance RPP13-like protein 4
6j6i_C1e-14542755176386Disease resistance RPP13-like protein 4
6j6i_F1e-14542755176386Disease resistance RPP13-like protein 4
6j6i_G1e-14542755176386Disease resistance RPP13-like protein 4
6j6i_L1e-14542755176386Disease resistance RPP13-like protein 4
6j6i_O1e-14542755176386Disease resistance RPP13-like protein 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR09G05180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006660573.10.0PREDICTED: putative disease resistance protein RGA3
TrEMBLA0A0D9XD000.0A0A0D9XD00_9ORYZ; Uncharacterized protein
STRINGLPERR09G05180.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1409969
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.24e-19Trihelix family protein