PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR09G02820.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | ERF | ||||||||
Protein Properties | Length: 213aa MW: 24111.4 Da PI: 5.6758 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59 | 1.1e-18 | 96 | 144 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+G+r+++ +grW++eIrdp+ r r++lg+f+tae+Aa+a++a ++++g LPERR09G02820.1 96 YRGIRQRP-WGRWASEIRDPV----RgVRVWLGTFDTAEDAARAYDAEVRRIHG 144 9*******.**********63....56*********************999998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 6.3E-36 | 95 | 158 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.248 | 95 | 152 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-21 | 96 | 154 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 7.9E-12 | 96 | 107 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.7E-32 | 96 | 154 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.3E-10 | 96 | 137 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.19E-28 | 96 | 154 | No hit | No description |
PRINTS | PR00367 | 7.9E-12 | 118 | 134 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MKQKSTRNHK SWRRRLVADD EDDWEAAFRD FLSRDDDDDD DFESNDFIIA APPIRNKCVH 60 GHSHATPPPG GDDDTRCHGE RSPTARRRRE RRSYPYRGIR QRPWGRWASE IRDPVRGVRV 120 WLGTFDTAED AARAYDAEVR RIHGRKAKTN FPQSPAATDQ PPASAATTPT TEEEGSGGDS 180 RILLECCSDE LMDSLLAGFD IAAGGDIDMR IWS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-19 | 96 | 152 | 6 | 63 | ATERF1 |
3gcc_A | 2e-19 | 96 | 152 | 6 | 63 | ATERF1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR09G02820.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FR720463 | 9e-58 | FR720463.1 Oryza eichingeri partial sub1C-1 like gene 1, bio material IRGC 101429. | |||
GenBank | FR720464 | 9e-58 | FR720464.1 Oryza eichingeri partial sub1C-1 like gene 2, bio material IRGC 101429. | |||
GenBank | FR720466 | 9e-58 | FR720466.1 Oryza eichingeri partial sub1C-1 like gene 4, bio material IRGC 101429. | |||
GenBank | HM117839 | 9e-58 | HM117839.1 Oryza rhizomatis hypothetical protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015651344.1 | 4e-56 | ethylene-responsive transcription factor 1-like | ||||
TrEMBL | A0A0D9XC32 | 1e-153 | A0A0D9XC32_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR09G02820.1 | 1e-154 | (Leersia perrieri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP17972 | 10 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72360.1 | 1e-23 | ERF family protein |