PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LPERR09G02550.1

Organism

Leersia perrieri

Taxonomic ID

77586

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia

Family

bZIP

Protein Properties

Length: 468aa MW: 51647.4 Da PI: 8.3622

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LPERR09G02550.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	35.7	1.9e-11	184	212	5	33
CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLee 33 k rr+++NReAAr+sR+RKka+i++Le LPERR09G02550.1 184 KTLRRLAQNREAARKSRLRKKAYIQQLES 212 6789***********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.5E-5	180	242	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	1.6E-8	181	223	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	8.795	182	224	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.8E-8	182	228	No hit	No description
SuperFamily	SSF57959	2.56E-7	184	218	No hit	No description
PROSITE pattern	PS00036	0	187	202	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	2.2E-26	268	340	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MGGSREEDHH YNHHPSELPI SFRSASPTTM IASSSMSKES SSYDMADFDQ ASLFSLYLES 60 HDQQSIQEQR QTLNIFPSQP MHIAHPTHEA KSAGVATMLP NGNQFQVLPS PNKRPDQQAG 120 QKISGSPNPS TGPNLPMPNS AKENKSSPIK ELKKCGLQKE GSSSGKGATS SDPEREGRRT 180 LDPKTLRRLA QNREAARKSR LRKKAYIQQL ESSRIRLSQL EQQVHAARVQ GAMLGTGDQH 240 QGLSGPSAAS LFDLEYGRWV EEHSKLIFQL RAALNEQMPD NQLQVFVSGA IAQHEELLSL 300 KGAIARADIF HLLCGVWASP AERCFLWLGG FRPSEAIKVM LKQVEALSEA QLMSIYELQQ 360 SAKGTEDALS HAMDALQQSL SDAVAAPDVA GGGFMGHMSL AMTKISTMED IVRQADGLRQ 420 QTLHKLQHML TIRQAARCFV SISDYFHRLR ALSTLWVARP RHEDGPAM

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MGGSREEDHH YNHHPSELPI SFRSASPTTM IASSSMSKES SSYDMADFDQ ASLFSLYLES  60
HDQQSIQEQR QTLNIFPSQP MHIAHPTHEA KSAGVATMLP NGNQFQVLPS PNKRPDQQAG  120
QKISGSPNPS TGPNLPMPNS AKENKSSPIK ELKKCGLQKE GSSSGKGATS SDPEREGRRT  180
LDPKTLRRLA QNREAARKSR LRKKAYIQQL ESSRIRLSQL EQQVHAARVQ GAMLGTGDQH  240
QGLSGPSAAS LFDLEYGRWV EEHSKLIFQL RAALNEQMPD NQLQVFVSGA IAQHEELLSL  300
KGAIARADIF HLLCGVWASP AERCFLWLGG FRPSEAIKVM LKQVEALSEA QLMSIYELQQ  360
SAKGTEDALS HAMDALQQSL SDAVAAPDVA GGGFMGHMSL AMTKISTMED IVRQADGLRQ  420
QTLHKLQHML TIRQAARCFV SISDYFHRLR ALSTLWVARP RHEDGPAM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LPERR09G02550.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK106988	0.0	AK106988.1 Oryza sativa Japonica Group cDNA clone:002-120-A05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015651202.1	0.0	transcription factor TGAL7 isoform X1
Swissprot	Q6H434	0.0	TGAL7_ORYSJ; Transcription factor TGAL7
TrEMBL	A0A0D9XBZ8	0.0	A0A0D9XBZ8_9ORYZ; Uncharacterized protein
STRING	LPERR09G02550.1	0.0	(Leersia perrieri)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2732	36	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06839.3	1e-117	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]