PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G19200.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ERF
Protein Properties Length: 467aa    MW: 49562.6 Da    PI: 4.8147
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G19200.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.81.1e-17277329155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      + y+GVr++ + grWv+e+r+p       r ++g+f+ta++Aa+a++aa+ +l g
  LPERR08G19200.1 277 PVYRGVRRRGRAGRWVCEVRVPGG--GGDRLWVGTFDTADDAARAHDAAMIALCG 329
                      68*******************944..35**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.1E-13277329IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-26278339IPR001471AP2/ERF domain
SuperFamilySSF541715.17E-18278339IPR016177DNA-binding domain
PROSITE profilePS5103220.192278337IPR001471AP2/ERF domain
SMARTSM003806.8E-23278343IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MSGESPSPKR PAGRTKFHET RHPVFRGVRR RGRRGRWVCE ALARHLRRAR HRXAAAACRL  60
NFADSAWLLA VPPPPAAAAF RSAADVQRAV AQAVHDFEIS RNGDVAEDAM SATSEPSSNN  120
DDDDDDTVNA TSCSSMSEDD DEVASPFEVD DVVSDMGWSL YYASLAQGLL MEPPVSDDDD  180
TGGDDGSCEI ADVIFMFSSW LHSWCMMLSQ EQQDIMRNGA TRLESVVKDL LFHFGWRSNY  240
RKSGTSSGQL MSSSAAAGPS SPKRPAGRTK FQETRHPVYR GVRRRGRAGR WVCEVRVPGG  300
GGDRLWVGTF DTADDAARAH DAAMIALCGA SAPLNFPDSV SLLRVHRSPA LSSGAAGNGQ  360
LLLPDVQRAA AEAVAEFQRR GGGGGGVNAS SGDDAAAIPP LPPAAAELDN GVIHGDVFGD  420
MGADLYYASL AEGLLMDPPP TMTAAGDCCC DDDGCGGGGG GELELWS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G19200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7318727e-42AL731872.2 Oryza sativa chromosome 12, . BAC OJ1003_E07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0056187e-42AP005618.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0509D04.
GenBankAP0056207e-42AP005620.3 Oryza sativa Japonica Group genomic DNA, chromosome 8, PAC clone:P0680F05.
GenBankAP0149647e-42AP014964.1 Oryza sativa Japonica Group DNA, chromosome 8, cultivar: Nipponbare, complete sequence.
GenBankAP0149687e-42AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126127e-42CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015649414.18e-67dehydration-responsive element-binding protein 1J
SwissprotA2YXQ73e-68DRE1J_ORYSI; Dehydration-responsive element-binding protein 1J
TrEMBLA0A0D9XAG40.0A0A0D9XAG4_9ORYZ; Uncharacterized protein
STRINGLPERR08G19200.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.13e-15C-repeat-binding factor 4