PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G17660.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB_related
Protein Properties Length: 314aa    MW: 34493.5 Da    PI: 5.1397
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G17660.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.25.8e-113777345
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45
                     ++  eE+   +d+ +  G++ W+ I+ +++ gRt++++k++w 
  LPERR08G17660.1 37 KFNLEEERVVIDLQAIIGNK-WAEISTYLP-GRTDNDVKNFWS 77
                     5778****************.*********.***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.7953084IPR017930Myb domain
SMARTSM007171.4E-93482IPR001005SANT/Myb domain
SuperFamilySSF466896.44E-103485IPR009057Homeodomain-like
CDDcd001677.15E-83780No hitNo description
PfamPF002494.7E-93777IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-133878IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MAPRTGAPFN PMVFFLAPAS RADCAGSTSS GQASGCKFNL EEERVVIDLQ AIIGNKWAEI  60
STYLPGRTDN DVKNFWSTRK KKLARMTRAH NNCSRSSRVL RTSTESYSGT TIAVQETRYH  120
IGESSQKASM AMIPIEETKR HTGESSQQTS MRCFSSSSYA LHTSTASYSE LSSQQMMIPF  180
QEETTHYQIG ESSSQQQQSM DNKPFHGGLV PSPDDSSLFA MVPVYCPTVF TDMASSADDG  240
FGVSNYLQEP AVSEVQPIQF FGPEDDGYAN VGLLHPTMSS HMVFDEMSPE MLHCFDLPPS  300
LPPPNPPPPP STQL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G17660.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9X9X10.0A0A0D9X9X1_9ORYZ; Uncharacterized protein
STRINGLPERR08G17660.10.0(Leersia perrieri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.11e-22MYB family protein