PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G15140.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family ZF-HD
Protein Properties Length: 294aa    MW: 30732.2 Da    PI: 7.1185
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G15140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.72.4e-3260113458
      ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                      +rY+eClkNhA+ +GghavDGCgEfm++ geeg+++al+CaACgCHRnFHR+e++
  LPERR08G15140.1  60 TRYRECLKNHAVGIGGHAVDGCGEFMAA-GEEGSIDALRCAACGCHRNFHRKESD 113
                      79*************************9.999********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.2E-2960112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257747.0E-2561114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.3E-3061111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.96362111IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.29E-20217292IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.4E-33219293IPR009057Homeodomain-like
TIGRFAMsTIGR015657.1E-26231287IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDFDEHDDGD GDEEMPPMPL SSGYDAPMQP GIGAAGGLPK PGDSGGRFGT PGGGGGGGAT  60
RYRECLKNHA VGIGGHAVDG CGEFMAAGEE GSIDALRCAA CGCHRNFHRK ESDSPTGAGP  120
TDQPSAVSPA AISAYGASPH HQFSPYYRTP AGYLHHQQQH HQIAAAAAAA AVAAGYPPHQ  180
RPLALPSTSH SGRDEGDDMS GLVGPMMIGP MVGNMSLGSG GGPSGSGGSG KKRFRTKFTQ  240
EQKDKMLAFA ERLGWRIQKH DEAAVQQFCE EVCVKRHVLK VWMHNNKHTL GKKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-282322891875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G15140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015695882.11e-161PREDICTED: zinc-finger homeodomain protein 2
SwissprotA2YWA61e-141ZHD2_ORYSI; Zinc-finger homeodomain protein 2
SwissprotQ6ZB901e-141ZHD2_ORYSJ; Zinc-finger homeodomain protein 2
TrEMBLA0A0D9X8Z00.0A0A0D9X8Z0_9ORYZ; Uncharacterized protein
STRINGLPERR08G15140.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39503269
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-60homeobox protein 22
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]