PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LPERR08G06220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
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Family | NAC | ||||||||
Protein Properties | Length: 133aa MW: 15198.8 Da PI: 10.0001 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 30.4 | 1.1e-09 | 21 | 117 | 12 | 114 |
NAM 12 eelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.....kgelv 100 +lv++yL +++ + +l++ i++++i++++Pwd+ ++yfF++++ k + ++ + +g+ k +v+ + + lv LPERR08G06220.1 21 ANLVCHYLYRHAINLPLPF---ITDINIMHHKPWDIV--------QLYFFMRKEIKFLVATIATVSPVTGFGDRYAKRSPVYYNprdgrYNMLV 103 579*************888...9*************5........68*******9999888777777799************98776555556* PP NAM 101 glkktLvfykgrap 114 g+k+tL+fy g+++ LPERR08G06220.1 104 GMKHTLTFYYGKDS 117 *********88764 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02365 | 3.9E-5 | 19 | 116 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.85E-9 | 22 | 117 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MMHATGGGSN LPFGSAKTTV ANLVCHYLYR HAINLPLPFI TDINIMHHKP WDIVQLYFFM 60 RKEIKFLVAT IATVSPVTGF GDRYAKRSPV YYNPRDGRYN MLVGMKHTLT FYYGKDSLQS 120 ALMGHEIILP RKC |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LPERR08G06220.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A0D9X5M1 | 1e-95 | A0A0D9X5M1_9ORYZ; Uncharacterized protein | ||||
STRING | LPERR08G06220.1 | 2e-96 | (Leersia perrieri) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.1 | 1e-09 | NAC domain containing protein 41 |