PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR08G06210.1
Organism
Leersia perrieri
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family NAC
Protein Properties Length: 291aa    MW: 31820.9 Da    PI: 6.7701
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR08G06210.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM119.92.3e-37181481128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lp G  F+Ptd elv +yL +++ + +l+l ++i+++di+ ++Pwd+   ++++++  +fF+++++k++ g+r+nrat++g+W++ g++ +v+ 
  LPERR08G06210.1  18 LPIGSMFRPTDGELVFHYLYQRAIQMPLPL-NFIPNIDILCHNPWDIV-PAQEQKNGKHFFTHKENKNPGGQRRNRATDNGFWRSAGSEVPVFY 109
                      699***************************.99**************5.456677899************************************ PP

              NAM  95 k.....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      k     ++ lvg+k+tLvfy+g+++++e+t+Wvm+e+rl
  LPERR08G06210.1 110 KpnggaEDILVGMKRTLVFYRGKSSSTERTEWVMQEFRL 148
                      9887666666***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.22E-3915158IPR003441NAC domain
PROSITE profilePS5100538.15918203IPR003441NAC domain
PfamPF023653.0E-1919148IPR003441NAC domain
SuperFamilySSF1019412.22E-39191202IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MADSGVCITL VNGTTRHLPI GSMFRPTDGE LVFHYLYQRA IQMPLPLNFI PNIDILCHNP  60
WDIVPAQEQK NGKHFFTHKE NKNPGGQRRN RATDNGFWRS AGSEVPVFYK PNGGAEDILV  120
GMKRTLVFYR GKSSSTERTE WVMQEFRLAG WCLFRCPMMG QVTSGGSSNT EVTIAMTNDG  180
GLSAAPTNVL PDSSWLICRI YAKRQRAPQV IIPPAFGNAQ EVMIPLAGGN AGLAPRAGPS  240
SPTCSIALSY EGSDECTDEG DAKDSYHANR DMSTTTGDGS EDVQVAMNRT L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-251714814140Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLPERR08G06210.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015697669.12e-92PREDICTED: NAC transcription factor NAM-B1-like
TrEMBLA0A0D9X5M00.0A0A0D9X5M0_9ORYZ; Uncharacterized protein
STRINGLPERR08G06210.10.0(Leersia perrieri)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44822369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.11e-31NAC domain containing protein 47